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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCATGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAGgtatagttttgagtcttgttttgtctatatttcattatattttgattagcatacaaacatatttttctcagctgataaaggttttgcttttaacattcat...

Basic information

species Glycine max
transcript GLYMA11G15020.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 4
ATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCATGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAGgtatagttttgagtcttgttttgtctatatttcattatattttgattagcatacaaacatatttttctcagctgataaaggttttgcttttaacatt-cat
|||| ||||||||| |     | ||||||||||| ||||||||| | ||||| ||||| ||||| |||||||||||||| || || || ||||| |    || |   | |||      | |  ||   | ||  |   |   |||     ||   ||  | | |  |||    |||    |||   ||  || 
ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgtttg---ttaaacttcgtt--aatcaaaactcgcaaaatgctagctgatatatttttatgactta-tgatcatatatccttttcatctttctaatggcag

upper sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
ATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCATGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAGgtatagttttgagtcttgttttgtctatatttcattatattttgattagcatacaaacatatttttctcagctgataaaggttttgcttttaacattcat
|||| || || ||||||  ||| |||||||||| ||| ||||||||||| || || || |||||||| ||||||||||| || ||||| |||||     | ||| | | | | | |    || |||   |  | | || || ||     | |   || || | || |||  | || |||             
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgttcg--tgtgaatatagatatattctcatatcaccttcatataatcagaat-----cgttagttactgatctaatat-gtttatgcag-----------

upper sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 5
ATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCATGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAGgtatagttttgagtcttgttttgtctatattt--cattatattttg--attagcatacaaacatatttttctcagctgataaaggttttgcttttaacattcat--
|||||||||| || |||  ||||||||||||| |||| ||||| |||||||| ||||| ||||||||||| || ||| | |||||||| ||||| |||| |  | |  || | |   | |  |   || |||  ||    || ||      | ||||| ||| |||  |  ||    || |   | | |  |  |   
ATGTCACTGAGCCATTGTTGATTGAGGTTGATAAGATATACCACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgt-tagtat--atttatgctatacttttgctcaccaatatgcttcattatcagtgctttagcatatatttgtcatgtattat---ttctctatctgatttggacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7233416|gb|AW568762.1|AW568762
EST:     ATCTTGCATGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAA
genomic: ATCTTGCATGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAGgtatagtttt ... atttttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAA
EST: gi|17022039|gb|BM093073.1|BM093073
EST:     ATCTTGCATGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAA
genomic: ATCTTGCATGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAGgtatagtttt ... atttttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAA
EST: gi|192301457|gb|FG994081.1|FG994081
EST:     ATCTTGCATGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAA
genomic: ATCTTGCATGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAGgtatagtttt ... atttttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAA