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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttcttagattctacttttatatttctgtcatttaccatgatcctgtcagctgtctacatgatttatttcttgcacaggagtagttttagttcc...

Basic information

species Glycine max
transcript GLYMA11G15010.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 5
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttcttagattctacttttatatttctgtcatttaccatgatcc---tgtcagctgtctacatgatttatttcttgcacaggagtagttttagttcc--------
|||||||  |||   || |  | |||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||  |||||||||| |||||   |  |||   ||| ||  | ||||  ||||| |  | | |  || |   |   |    | | ||||   | || ||   |    | | | | ||    |        
ATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAGgtacagtctct---attata--tatataactctgttaagtccaactattcaaatacaaatcttgttcatgtcctgtt-ctgatatttaaatggatgtataatcatgtacag

upper sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G157772_T01 (Zea mays), 5'ss of exon 2
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttcttagattctacttttatatttctgtcat-ttaccatgatcctgtcagctgtctacatgatttatttcttgcacaggagtagttttagttcc
||||||  ||||   |  |  | || ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||  |||||||||| |||||  |    ||     ||| ||     |    ||  || ||  |||  |  |    | | |     |   | |||   || |   |               
ATGTCATCGAGCCGCTTCTTGTAGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatg----ctacatctctgctgcatgagaggtggtatattttcatagtttttcttgatattggtgtttgtgattgtctgtaacag---------------

upper sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 4
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttcttagattctacttttat-atttctgtcat-ttaccatgatcctgtcagctgtctacatgatttatttcttgcacaggagtagttttagttcc
||||||| ||||   |  |  | || ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||  |||||||||| |||||  |      |||||     ||  || |    ||  || ||  |||  |  |  | | | |     |   | |||   || |   |               
ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAGgtatg-----ctagatctctgttacatgagaggtggtatattttcatagtttttcctgatattggtgtttgtgattgtctgtaacag---------------

upper sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G382038_T01 (Zea mays), 5'ss of exon 6
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttcttagattctacttttatatttctgtcat-ttaccatgatcctgtcagctgtctacatgatttatttcttgcacaggagtagttttagttcc
||||||| ||||   |  |  | || ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||  ||||| |||| |||||  |    ||     ||| ||     |    ||  || ||  |||  |  |  | | | |     |   | |||   || |   |               
ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACTCTGTTAAGgtatg----ctagatctctgctgcatgagaggtggtatattttcatagtttttcctgatattggtgtttgtgattgtatgtaacag---------------

upper sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 5
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtggg--ggttcttagattctacttttatatttctgtcatttaccatgatcctgtcagctgtctacatgatttatttcttgcacaggagtagttttagttcc
||||||| |||| | |  |  | |||||||| || |||||||| ||||| ||||||||||| ||||||||||||||  |||| ||||| |||||      |||||  | |         | | | | ||  ||||  ||  |  |  | | | | | ||||||||   | ||    |      ||   ||    
ATGTCACCGAGCCACTTCTTGTGGAGGTTGACCAGATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAATCCTGTTAAGgtatactagttctctgctctgtgagagacagtac-gttgttta--atagtttttcctggtattt-catgattttggtgtttgtaatttcctgtaacag----

upper sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G300412_T01 (Zea mays), 5'ss of exon 11
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttcttagattctacttttatatttctgtcat-ttaccatgatcctgtcagctgtctacatgatttatttcttgcacaggagtagttttagttcc
||||||| ||||   |  |  | || ||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||  ||||| |||| |||||  |    ||     ||| ||     |    ||  || ||  |||  |  |  | | | |     |   | |||   || |   |               
ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATATTCTACAAGCACAACTCTGTTAAGgtatg----ctagatctctgctgcatgagaggtggtatattttcatagtttttcctgatattggtgtttgtgattgtctgtaacag---------------

upper sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G177373_T02 (Zea mays), 5'ss of exon 5
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttcttagattctacttttatatttctgtcat-ttaccatgatcctgtcagctgtctacatgatttatttcttgcacaggagtagttttagttcc
||||||| ||||   |  |  | || ||||| ||||||| ||| ||||| ||||||||||| ||||||||||||||  ||||| |||| |||||  |    ||     ||| ||     |    ||  || ||  |||  |  |  | | | |     |   |  ||   || |   |               
ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTGTCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACTCTGTTAAGgtatg----ctagatctctgctgcatgagaggtggtatattttcatagtttttcctgatattggtgtttgtggttgtctgtaacag---------------

upper sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 4
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttcttagattctacttttatatttctgtcatttacca--tgatcc-tgtcagctgtctac-atgatttatttcttgcacaggagtagttttagttcc
|||| || || |   | ||  | ||||||||||||||||| ||| | ||||| || ||||||||||| ||||||||||||||||| || |||||     || ||| | |    |  |  |     |  |  | | |  ||||   | |        ||  || || |||   || ||      || |   ||    
ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgt-----ttgttaaacttcgttaatcaaaactcgcaaaatgctagctgatatatttttatgacttatgatcatatatccttttcatctttctaatggcag----

upper sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttcttagat-tctacttttatatttctgtcatttaccatgatcctgtcagctgtctacatgatttatttcttgcacaggagtagttttagttcc
|||| || ||||  |||||||| ||||||||||  || || |||||||| || ||||| ||||| ||||||||||||||||||||||| |||||  | ||   || |  | || | | ||||  |  |||| ||    ||  | || || |    |  | || | ||| | |||                   
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgttcgtgtgaatatagatatattctcatatcaccttcatataatcagaatc-gttagttactgatctaatatgtttat-gcag------------------

upper sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 5
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttcttagattctacttttatatttc--tgtcatttaccatgatcctgtcagc-tgtctacatgatttatttcttgcacaggagtagttttagttcc
||||||| |||| ||||||||||||||||||| | || || || |||||||| || |||||||| || || || ||| |||| |||||||||||  |  |  |||   | |||||||      |  | |  || |  || |     | ||| | | |   | || ||||  ||    |    |  |||       
ATGTCACTGAGCCATTGTTGATTGAGGTTGATAAGATATACCACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatatttatgctatacttttgctcaccaatatgcttcattatcagtgctttagcatatatttgtcatgtattatttctctatc--tgatttggacag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525432|gb|BU084243.1|BU084243
EST:     ATCTTGCATGCTCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAG                         ACAATAAAGACAAATGTGATTGGAACACTGAACATGCTTGGGCTTGCTAAG
genomic: ATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttc ... acctttacagACAATAAAGACAAATGTGATTGGAACACTGAACATGCTTGGGCTTGCTAAG
EST: gi|18040716|gb|BM309010.1|BM309010
EST:     ATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAG                         ACAATAAAGACAAATGTGATTGGAACACTGAACATGCTTGGGCTTGCTAAG
genomic: ATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttc ... acctttacagACAATAAAGACAAATGTGATTGGAACACTGAACATGCTTGGGCTTGCTAAG