Sequence
atgc intronic sequence ATGC exonic sequenceGTACTTTGCGTACCAACGAACCTGGAAGCCTTTTAATCCTATCCTTGGAGAGACTTATGAAATGGTTAACCATGGTGGAATTACATTTCTTGCTGAACAGgtatcttttcagtatgtgattctcatggaaactctctggtgcatgatttctactcactttctctcctctgcgtgtctttgaaatattctgttctctcttg...
Basic information
species | Glycine max |
transcript | GLYMA11G14770.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G14770.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g16690.1 (Oryza sativa), 5'ss of exon 5
GTACTTTGCGTACCAACGAACCTGGAAGCCTTTTAATCCTATCCTTGGAGAGACTTATGAAATGGTTAACCATGGTGGAATTACATTTCTTGCTGAACAGgt-----atcttttcagtatgtgattctcatggaaac-tct----ctggtgcatgatttctactcactttctctcctctgcgtgtctttga-aatattctgttctctcttg----
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CTACTTTGCATACCAGCGTACCTGGAAGCCTTTCAATCCCATCCTTGGGGAGACATATGAGATGGTTAACCACCAGGGTATTTCATTTATTGCTGAGCAGgttagtgatatcaccattgcagaaaccttctgcaaacatcttctgccagccaatgatgctggttccacagttctttactgcatgccatcgataatttttcattttattttctcag
upper sequence: GLYMA11G14770.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G174644_T01 (Zea mays), 5'ss of exon 5
GTACTTTGCGTACCAACGAACCTGGAAGCCTTTTAATCCTATCCTTGGAGAGACTTATGAAATGGTTAACCATGGTGGAATTACATTTCTTGCTGAACAGgtatcttttcagtatgtgattctcatggaaactctctggtgcatgatttctactcactttctctcctctgcgtgtctttgaaatattctgttctctcttg
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GTACTTTGCATATCAACGCACATGGAAGCCTTTTAATCCGATCCTTGGAGAGACTTATGAGATGGTTAACCACCAGGGCATTACATTTCTTGCTGAGCAGgt------tggtgatatgaatgtcattgcagatatct--tgaatggagacagctttgtcaacaaattttgc-taattatgcatacccttattttgtcag-
upper sequence: GLYMA11G14770.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 5
GTACTTTGCGTACCAACGAACCTGGAAGCCTTTTAATCCTATCCTTGGAGAGACTTATGAAATGGTTAACCATGGTGGAATTACATTTCTTGCTGAACAGgtatcttttcagtatgtgattctcatggaaactctctggtgcatgatttctactcactttctctcctctgcgtgtctttgaaatattctgttctctcttg-
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ATACTTCGCGTATCAGCGCACATGGAAGCCTTTTAATCCGATCCTTGGAGAGACTTACGAGATGGTTAACCACCAGGGCATCACATTTCTTGCCGAGCAGgtcggtgatacgaatgtcat-cgcagattaacttgaacggagacaactttg--tcaacaaattttttctaattatgtattttgtactctcatttttatcag
upper sequence: GLYMA11G14770.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G59420.1 (Arabidopsis thaliana), 5'ss of exon 5
GTACTTTGCGTACCAACGAACCTGGAAGCCTTTTAATCCTATCCTTGGAGAGACTTATGAAATGGTTAACCATGGTGGAATTACATTTCTTGCTGAACAGgtatcttttcagtatgtgattctcatggaaactctctggtgcatgatttctactcactttctctcctctgcgtgtc-tttgaaata---ttctgttctctcttg-
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TTACTATGCCTTCCAACGAACTTGGAAGCCTTTCAATCCTATTCTTGGGGAGACATATGAGATGGTCAACCATGGTGGGATTTCTTTTATTTCTGAGCAGgtgcggctata-catctcattgttactcacatagt--ggataatgactaattcgcaataagtcatatatttgtttcatttataataagttactgtaatttttcag
upper sequence: GLYMA11G14770.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g04930.t01 (Vitis vinifera), 5'ss of exon 5
GTACTTTGCGTACCAACGAACCTGGAAGCCTTTTAATCCTATCCTTGGAGAGACTTATGAAATGGTTAACCATGGTGGAATTACATTTCTTGCTGAACAGgtatcttttcagtatgtgattctcatggaaactctctggtgcatgatttctactcactttc-tctcctctgcgtgtc-tttgaaatattctgttctctcttg
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CTATTATGCCTACCAACGAACTTGGAAGCCTTTTAATCCCATTCTTGGTGAGACTTATGAAATGGCTAATCATGGTGGAATAACATTTATTTCAGAGCAAgtaggttttt--tgagcaccttttattttattttatttattttttaggtttttaaatttcagttttatttatatatcgttttaagtgtgctctttttttatc
upper sequence: GLYMA11G14770.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S148_87V6.1 (Physcomitrella patens), 5'ss of exon 5
-------------------GTACTTTGCGTACCAACGAACCTGGAAGCCTTTTAATCCTATCCTTGGAGAGACTTATGAAATGGTTAACCATGGTGGAATTACATTTCTTGCTGAACAGgtatcttttcagtatgtgattctcatggaaactctctggtgcatgatttctactcactttctctcctctgcgtgtctttgaaatattctgttctctcttg
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GCACTTGGGCAGTGTCAGTTTATCCCGCATATCAAAGGACATGGAAGCCTTTCAATCCTATTCTCGGGGAGACTTATGAAATGgtgaagcataatggcatcacgtttttggctgagcaggtgagcttcgtgtatgacag--------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151412307|gb|EV282119.1|EV282119EST: AGACTTATGAAATGGTTAACCATGGTGGAATTACATTTCTTGCTGAACAG GTGAGTCATCATCCCCCAATGAGTGCTGCGCATGCCGAGAATGAGCATTTT
genomic: AGACTTATGAAATGGTTAACCATGGTGGAATTACATTTCTTGCTGAACAGgtatcttttc ... taaatttcagGTGAGTCATCATCCCCCAATGAGTGCTGCGCATGCCGAGAATGAGCATTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACTTTGCGTACCAACGAACCTGGAAGCCTTTTAATCCTATCCTTGGAGAGACTTATGAAATGGTTAACCATGGTGGAATTACATTTCTTGCTGAACAGgtatcttttcagtatgtgattctcatggaaactctctggtgcatgatttctactcactttctctcctctgcgtgtctttgaaatattctgttctctcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcct