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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGAAAGTTTTGCTTCTTCTCTGTTGGAAGAGTTTAAAACCAATAAAACAAAGTGTTTTGAGCTCTCTGAAATTGCGGGTCATGTTGTTGAATTCAGgtatattttttgctattggtcattttatgctgtcaccctgaagaattaaatttgattattttattatcattggtag

Basic information

species Glycine max
transcript GLYMA11G14550.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14550.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 2
TTGATGAAAGTTTTGCTTCTTCTCTGTTGGAAGAGTTTAAAACCAATAAAACAAAGTGTTTTGAGCTCTCTGAAATTGCGGGTCATGTTGTTGAATTCAGgtatattttttgctattggtcattttatgct--gtcaccctga-agaat--taaatttgattattttattatcattggtag-------
| |||||| | ||||| || || ||  | |||||||| || |  || ||||| || ||||||||||| || |||||||| |||||||||||||| || |||||||| ||     || |    |||| ||||  || |  || | || ||  |  | ||||| || | |||| |||             
TGGATGAAGGCTTTGCCTCCTCACTACTTGAAGAGTTCAAGAGTAACAAAACCAAATGTTTTGAGCTTTCAGAAATTGCTGGTCATGTTGTTGAGTTTAGgtatatgttgc-tcatagagatttttgtgctacgttattctaatagtatcctgcaattgat-atgtgattaacatcttctatgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208277888|gb|GE074895.1|GE074895
EST:     ACAAAGTGTTTTGAGCTCTCTGAAATTGCGGGTCATGTTGTTGAATTCAG                         TGCGGATCAATATGGGAGTCGATTTATTCAACAAAAGCTTGAAACAGCTAC
genomic: ACAAAGTGTTTTGAGCTCTCTGAAATTGCGGGTCATGTTGTTGAATTCAGgtatattttt ... tcattggtagTGCGGATCAATATGGGAGTCGATTTATTCAACAAAAGCTTGAAACAGCTAC
EST: gi|208283235|gb|GE082369.1|GE082369
EST:     ACAAAGTGTTTTGAGCTCTCTGAAATTGCGGGTCATGTTGTTGAATTCAG                         TGCGGATCAATATGGGAGTCGATTTATTCAACAAAAG
genomic: ACAAAGTGTTTTGAGCTCTCTGAAATTGCGGGTCATGTTGTTGAATTCAGgtatattttt ... tcattggtagTGCGGATCAATATGGGAGTCGATTTATTCAACAAAAG
EST: gi|208244401|gb|GE036132.1|GE036132
EST:     ACAAAGTGTTTTGAGCTCTCTGAAATTGCGGGTCATGTTGTTGAATTCAG                         TGCGGATCAATATGGGAGTCGATTTATTCAACAAAAGCTTGAAACAGCTAC
genomic: ACAAAGTGTTTTGAGCTCTCTGAAATTGCGGGTCATGTTGTTGAATTCAGgtatattttt ... tcattggtagTGCGGATCAATATGGGAGTCGATTTATTCAACAAAAGCTTGAAACAGCTAC