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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCATGGGCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGgtatggacaatatatggttgcattagttgatatgtatatgtttgactctctctggaattttcttaatgtcttataattttcttttgttctttcaattatatacccctctttag

Basic information

species Glycine max
transcript GLYMA11G14530.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14530.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 4
GCATGGACTTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCATGGGCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGgtatggacaatatatggttgcattagttgatatgtatatgtttgactctctctggaattttcttaatgtcttataattttcttttgttctttcaattatatacccctctttag
||||||||| | |||||||||||||||| | ||   ||| ||| |||| ||||| ||||||||||||||||||||||||||||| || || ||||| |||||    || ||   | |||     | |  |  |  |  ||  |    || | ||  ||| | |     ||  ||||   ||| |   ||||||| |||| | |   |      
GCATGGACTAGTATCCCAGAGAAGAGAACTGGCTGGCAAGCTTTATGGTCATGTACTGACACTTAGCCTTCAAATGTATGGTTGTCGAGTGATCCAAAAGgt----accat---tagttttgccactaaacctcaacttgacttttgctgtgtgatattgtgtgttgttcacataaaggtctctctatctttca-ttatctgcagttg-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208242603|gb|GE038801.1|GE038801
EST:     CCTTCAAATGTATGGTTGCCGTGTCATCCAGAAG                         GCCATTGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTT
genomic: CCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGgtatggacaa ... ccctctttagGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTT