Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTATTTGGgtaagtgtttctatttcagtttattttccaaccccttttcatttcatatatgtttctggagatgtaaaatcagattaaaaacgtatattgtttcttttaatttgttttgtaattacag

Basic information

species Glycine max
transcript GLYMA11G14040.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996716|gb|BM086088.1|BM086088
EST:     GAAAAGGACGCCAAGTTTATTTGG                         GTGGATATGATAAAGAAGAAAAAGCAGCTAGGTCTTATGATTTAGCTGCACT
genomic: GAAAAGGACGCCAAGTTTATTTGG
EST: gi|17023082|gb|BM094116.1|BM094116
EST:     GAAAAGGACGCCAAGTTTATTTGG                         GTGGATATGATAAAGAAGAAAAAGCAGCTAGGTCTTATGATTTAGCTGCACT
genomic: GAAAAGGACGCCAAGTTTATTTGG
EST: gi|24205644|gb|BU964897.1|BU964897
EST:     GAAAAGGACGCCAAGTTTATTTGG                         GTGGATATGATAAAGAAGAAAAAGCAGCTAGGTCTTATGATTTAGCTGCACT
genomic: GAAAAGGACGCCAAGTTTATTTGG
EST: gi|24206010|gb|BU965263.1|BU965263
EST:     AAGTTTATTTGG                         GTGGATATGATAAAGAAGAAAAAGCAGCTAGGTCTTATGATTTAGCTGCACT
genomic: AAGTTTATTTGG