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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCCTTACTCAAATTGAGCGATATCTGAAACAAGCTATTGTAGACAAGAATCCAGTCGTTGCAAGTGCAGCCCTGGTTAGCGGCATTCATATACTCCAGgtattattaaaatctattggtaattccttatctcatattccacatgtgttgcctgcttattctatgtccccccttatcag

Basic information

species Glycine max
transcript GLYMA11G12610.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12610.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g12590.1 (Oryza sativa), 5'ss of exon 5
TCTCCTTACTCAAATTGAGCGATATCTGAAACAAGCTATTGTAGACAAGAATCCAGTCGTTGCAAGTGCAGCCCTGGTTAGCGGCATTCATATACTCCAGgta---ttattaaaatctattggtaattccttatctcatattccacatgt---gttgcctgcttattctatgtccccccttatcag
 |||||||||||||||||| ||||| ||||||||||||| || || |||||||| || ||||| ||||| || || ||||| ||||| ||| | || ||||||   || |  |  |||||  | ||      ||      || |  | ||         | |||||| ||||              
CCTCCTTACTCAAATTGAGAGATATTTGAAACAAGCTATAGTTGATAAGAATCCTGTGGTTGCTAGTGCTGCTCTTGTTAGTGGCATCCATCTGCTTCAGgtacacttctatagttctatacgaaaaaaaacataattcttttcggaagtcaaaaactgtacttattatatgcag-----------

upper sequence: GLYMA11G12610.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G012501_T03 (Zea mays), 5'ss of exon 4
TCTCCTTACTCAAATTGAGCGATATCTGAAACAAGCTATTGTAGACAAGAATCCAGTCGTTGCAAGTGCAGCCCTGGTTAGCGGCATTCATATACTCCAGgtattatta-aaatctattggtaattccttatctcatattccacatgtgttgcctgcttattctatg------tccccccttatcag
 || || |||||||||||| ||||| |||| ||||||||||| |||||||| ||||| ||||| |||||  | || ||||| ||||| ||  |   ||||||| ||  | || |||||   ||  | |  ||||| | ||  |  |  |||  |||  | || | ||      ||  | ||   |||
CCTACTAACTCAAATTGAGAGATATTTGAAGCAAGCTATTGTTGACAAGAACCCAGTGGTTGCTAGTGCTTCTCTTGTTAGTGGCATCCACCTGGCCCAGgtactagcataattctatgcatatataccgatctcttgtttaaggttggttaactgtatcttttgtgagtttgtctacactctacag

upper sequence: GLYMA11G12610.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G036034_T01 (Zea mays), 5'ss of exon 5
TCTCCTTACTCAAATTGAGCGATATCTGAAACAAGCTATTGTAGACAAGAATCCAGTCGTTGCAAGTGCAGCCCTGGTTAGCGGCATTCATATACTCCAGgtat-tattaaaatcta-ttggtaattccttatctcatattccacatgtgttgcctgcttattctatgtccccc-cttatcag------------
||| || || ||||| ||| | ||| |||| ||||| ||||| ||||||||||| || ||||| ||||||||||| ||||| |||||  |  | || || |||| |  |    || | ||||  ||    |  ||  | |    ||  | | |     || |  |||||   || | | |  |            
TCTTCTCACCCAAATCGAGAGGTATTTGAAGCAAGCCATTGTTGACAAGAATCCTGTTGTTGCCAGTGCAGCCCTTGTTAGTGGCATCTACTTGCTTCAAgtatgtcctgtgctccacttggatatattgttactagtttgtggcagctttagttcttttttattatgttttccacatgtttgtactattggcag

upper sequence: GLYMA11G12610.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G178618_T01 (Zea mays), 5'ss of exon 5
TCTCCTTACTCAAATTGAGCGATATCTGAAACAAGCTATTGTAGACAAGAATCCAGTCGTTGCAAGTGCAGCCCTGGTTAGCGGCATTCATATACTCCAGgtat------tattaaaatctattggt--aattccttatctcatattccacatgtgttgcc-----tgcttattctatgtccccc-cttatcag------------
 || || || ||||| ||| | ||| |||| ||||| ||||| ||||||||||| || ||||| ||||| ||||| ||||| |||||  |  | || || ||||       | | | || |  || |  | ||   ||| |  |         |||  ||      |  || |  |||||   || | | |  |            
CCTTCTCACCCAAATCGAGAGGTATTTGAAGCAAGCCATTGTTGACAAGAATCCTGTTGTTGCCAGTGCGGCCCTTGTTAGTGGCATCTACTTGCTTCAAgtatgtcctgcagttatattttgtgctccagttggatatattgttactagttggtgcagctatagatatttttattatgttttccacatgtttgtattattggcag

upper sequence: GLYMA11G12610.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G34450.1 (Arabidopsis thaliana), 5'ss of exon 4
TCTCCTTACTCAAATTGAGCGATATCTGAAACAAGCTATTGTAGACAAGAATCCAGTCGTTGCAAGTGCAGCCCTGGTTAGCGGCATTCATATACTCCAGgtattattaaaat-ctattggtaattccttatctcatattccacatgtgttgcctgcttattctatgtccccccttatcag
 || || ||||| |||||||||||  |||||||||| ||||| || |||||||| || ||| ||||||||||  | || || ||  ||||  | ||| |||||   || | |  | |    || |   |    || || |    ||||  ||| |   | |  ||| |  |   || ||||
CCTTCTCACTCAGATTGAGCGATACTTGAAACAAGCCATTGTGGATAAGAATCCCGTTGTTTCAAGTGCAGCTTTAGTCAGTGGGCTTCACTTGCTCAAGgtaccttttacacaccaaaactattaggtagcttcttaattgtaatgttatgcttatat-tcgtatattgctgttt-tcag

upper sequence: GLYMA11G12610.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 5
TCTCCTTACTCAAATTGAGCGATATCTGAAACAAGCTATTGTAGACAAGAATCCAGTCGTTGCAAGTGCAGCCCTGGTTAGCGGCATTCATATACTCCAGgtattattaaaatctat-tggtaattccttatctcatat-tccacatgtgttgcctgcttat----tctatgtccccccttatcag------------
 || || || || |||||||||||  |||||||||| || || |||||||| || || |||||||||||||| || || || || |||||| | |||||||||  |||    | | | | |   ||  ||||   || | |  |  |   ||  |  ||||     ||||         |||| |             
CCTTCTCACCCAGATTGAGCGATACTTGAAACAAGCAATAGTTGACAAGAACCCTGTTGTTGCAAGTGCAGCTCTTGTCAGTGGAATTCATCTTCTCCAGgtacaattgggttgtgtgtagattttttttattctatttatatatttaaattatcctcttacatgctctaataatatgattattatttttttggatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120529501|gb|EH257635.1|EH257635
EST:     ATCCAGTCGTTGCAAGTGCAGCCCTGGTTAGCGGCATTCATATACTCCAG                         ACAAATCCTGAGATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCGGTT
genomic: ATCCAGTCGTTGCAAGTGCAGCCCTGGTTAGCGGCATTCATATACTCCAGgtattattaa ... cccttatcagACAAATCCTGAGATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCGGTT