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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGAACAGTATGTTCATCATCAATGCTGGTTCTGGATTTAGAATGTTGTGGAACAGTATTAAGTCGTTCCTTGATCCTAAGACCACCTCCAAAATCCATgtaagcattttttatatacttttcaccatgaagcaatgtacgtttcagttaagtaggagcacttaatagattactgctttattgaccag

Basic information

species Glycine max
transcript GLYMA11G12270.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12270.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G18180.1 (Arabidopsis thaliana), 5'ss of exon 6
CTTGAACAGTATGTTCATCATCAATGCTGGTTCTGGATTTAGAATGTTGTGGAACAGTATTAAGTCGTTCCTTGATCCTAAGACCACCTCCAAAATCCATgtaagcattttttatatacttttcaccatgaagcaatgtacgtttcagttaagtaggagcacttaatagattactgctttattgaccag
||||||||| ||||| |||||||||||||| || ||||| || |||||||||||||   ||||||| |||||||| || ||||| ||  | || ||||||| ||| ||     | |  ||||| | ||        ||   | |  |  | || ||     |||| ||  |  ||  |||  |   |||
CTTGAACAGGATGTTTATCATCAATGCTGGCTCAGGATTCAGGATGTTGTGGAACACGGTTAAGTCTTTCCTTGACCCAAAGACTACAGCAAAGATCCATgcaagtat---acaaaccctttttatcac----tcttgactgatataaatgag-agatattcttactacttagctaatttgatattcag

upper sequence: GLYMA11G12270.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G36490.1 (Arabidopsis thaliana), 5'ss of exon 5
CTTGAACAGTATGTTCATCATCAATGCTGGTTCTGGATTTAGAATGTTGTGGAACAGTATTAAGTCGTTCCTTGATCCTAAGACCACCTCCAAAATCCATgtaagcattttttatatacttttcaccatgaagcaatgtac---gtttcagttaagtaggagcacttaatagattactgctttattgaccag---
||||||||| ||||| |||||||||||||| || ||||| ||||||||||||||||   ||||||| |||||||| || ||||| ||  | |||||||||| ||| |||      | || ||| || ||  |    | | |    |   | |||  |   |  | ||||   ||||    ||  ||||  |    
CTTGAACAGGATGTTTATCATCAATGCTGGCTCAGGATTCAGAATGTTGTGGAACACGGTTAAGTCCTTCCTTGACCCGAAGACTACAGCAAAAATCCATgcaagtattca----aaaccttttactattgaatcttcttctgaatgataattagttttcacaatttaagtaattatactttgtttgaataccag

upper sequence: GLYMA11G12270.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0038g04480.t01 (Vitis vinifera), 5'ss of exon 6
CTTGAACAGTATGTTCATCATCAATGCTGGTTCTGGATTTAGAATGTTGTGGAACAGTATTAAGTCGTTCCTTGATCCTAAGACCACCTCCAAAATCCATgtaagcattttttatatacttttcaccatgaagcaatgtacgtttcagttaagtaggagc-acttaatagatta-ctgctttattg-accag
  |   | ||||||||||||| ||||||||||||||||| ||  |||| ||||| | | | || || |||||||| || |||||||| || || || ||||| | |||   || | | || || ||| | ||  | |    ||||   | ||  |  | | ||||||     || | | ||||||| |||||
ACTTTGCCGTATGTTCATCATTAATGCTGGTTCTGGATTCAGGCTGTTATGGAATACTGTCAAATCTTTCCTTGACCCCAAGACCACTTCAAAGATTCATgtgaccat---ttgtcttctgtttaccttaaactattacttgttttgatcaaacaaaatccacttaaccatctaacggttttattgtaccag