Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAGgtgagtaacactgccggtttctgtgtattatggcccttattttgatttcatccgatataggaaattaaaattgtaaagaagaacatgtactaaggtctcaactttttctgattattgatttgttatttctcttcttaatgatacag

Basic information

species Glycine max
transcript GLYMA11G12260.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12260.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 6
GGCCTTAAGAACTTTACAAAGTCTGCCCGGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAGgtgagtaacactgccggtttctgtgtattatggcccttattttgatttcatccgatataggaaattaaaattgtaaagaagaacatgtactaaggtctcaactttttctgattattgatttgttatttctcttcttaatgatacag
||  |||||||| | |||||| |||| ||||| |||||||||||| | || ||||||||||| |||||||||||||||||    |||  |     ||||||| |   |||        | |  ||  |  | || |   || | | |   || |   |  |  ||  ||  | |||  |  | |  | | |  ||                             
GGTTTTAAGAACCTAACAAAGGCTGCACGGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacctt-----tttctgt-tgacatgata--agctatagttgtaatccatttcaaaattgatataggtgactgaatatgtgccctg-gatcttgaactctcttaactgctgcag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193720487|gb|FK657395.1|FK657395
EST:     GGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTA
genomic: GGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAGgtgagtaaca ... aatgatacagACTCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTA
EST: gi|193511296|gb|FK470371.1|FK470371
EST:     GGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTA
genomic: GGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAGgtgagtaaca ... aatgatacagACTCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTA
EST: gi|208266803|gb|GE061918.1|GE061918
EST:     GGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTA
genomic: GGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAGgtgagtaaca ... aatgatacagACTCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTA
EST: gi|193404447|gb|FK365356.1|FK365356
EST:     GGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTA
genomic: GGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAGgtgagtaaca ... aatgatacagACTCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTA
EST: gi|15813836|gb|BI786111.1|BI786111
EST:     GGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTA
genomic: GGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAGgtgagtaaca ... aatgatacagACTCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTA
EST: gi|8284166|gb|BE021725.1|BE021725
EST:     GGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTA
genomic: GGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAGgtgagtaaca ... aatgatacagACTCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTA
EST: gi|193495792|gb|FK462880.1|FK462880
EST:     GGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTA
genomic: GGGACCTCATTATGCGGTTACAAAAGATTGATGGTGATAATTACCCTGAGgtgagtaaca ... aatgatacagACTCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTA