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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCACTCAGCTCAAAGCCGAGCCTTAGAGCAGCAGAGAGAACAGGAATCATGCCATCTGAGTGGTGAATCTATAGAAACACCTTTATTACAGGACCAAgtaaacttcttacctgctcatagctaatattcttttatattgttgacaataaccttttaatgaattggtccctgctgtttgttttgttgtgaag

Basic information

species Glycine max
transcript GLYMA11G12120.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209710094|gb|BW653549.1|BW653549
EST:     CATGCCATCTGAGTGGTGAATCTATAGAAACACCTTTATTACAGGACCAA                         GAATTGTCTGTTGATTCATCAAAGCAAGTTAAGTTGGGCTTTTTAGCAGGT
genomic: CATGCCATCTGAGTGGTGAATCTATAGAAACACCTTTATTACAGGACCAAgtaaacttct ... tgttgtgaagGAATTGTCTGTTGATTCATCAAAGCAAGTTAAGTTGGGCTTTTTAGCAGGT
EST: gi|208251508|gb|GE048741.1|GE048741
EST:     CATGCCATCTGAGTGGTGAATCTATAGAAACACCTTTATTACAGGACCAA                         GAATTGTCTGTTGATTCATCAAAGCAAGTTAAGTTGGGCTTTTTAGCAGGT
genomic: CATGCCATCTGAGTGGTGAATCTATAGAAACACCTTTATTACAGGACCAAgtaaacttct ... tgttgtgaagGAATTGTCTGTTGATTCATCAAAGCAAGTTAAGTTGGGCTTTTTAGCAGGT
EST: gi|209712503|gb|BW653686.1|BW653686
EST:     CATGCCATCTGAGTGGTGAATCTATAGAAACACCTTTATTACAGGACCAA                         GAATTGTCTGTTGATTCATCAAAGCAAGTTAAGTTGGGCTTTTTAGCAGGT
genomic: CATGCCATCTGAGTGGTGAATCTATAGAAACACCTTTATTACAGGACCAAgtaaacttct ... tgttgtgaagGAATTGTCTGTTGATTCATCAAAGCAAGTTAAGTTGGGCTTTTTAGCAGGT
EST: gi|207812203|gb|GD785622.1|GD785622
EST:     CTATAGAAACACCTTTATTACAGGACCAA                         GAATTGTCTGTTGATTCATCAAAGCAAGTTAAGTTGGGCTTTTTAGCAGGT
genomic: CTATAGAAACACCTTTATTACAGGACCAAgtaaacttct ... tgttgtgaagGAATTGTCTGTTGATTCATCAAAGCAAGTTAAGTTGGGCTTTTTAGCAGGT
EST: gi|207695992|gb|GD676913.1|GD676913
EST:     CTATAGAAACACCTTTATTACAGGACCAA                         GAATTGTCTGTTGATTCATCAAAGCAAGTTAAGTTGGGCTTTTTAGCAGGT
genomic: CTATAGAAACACCTTTATTACAGGACCAAgtaaacttct ... tgttgtgaagGAATTGTCTGTTGATTCATCAAAGCAAGTTAAGTTGGGCTTTTTAGCAGGT
EST: gi|193585997|gb|FK540361.1|FK540361
EST:     ATGCCATCTGAGTGGTGAATCTATAGAAACACCTTTATTACAGGACCAA                         GAATTGTCTGTTAGATTCATCAAAGCAAGTTAAGTTGGGCTTTTTAGCAGG
genomic: ATGCCATCTGAGTGGTGAATCTATAGAAACACCTTTATTACAGGACCAAgtaaacttct ... tgttgtgaagGAATTGTCTGTT-GATTCATCAAAGCAAGTTAAGTTGGGCTTTTTAGCAGG
EST: gi|207820277|gb|GD792073.1|GD792073
EST:     CCATCTGGGTGGTGTAATTCTTATTAGAAACACCTTTATTACAGGACCAA                         GAATTGTCTGTTGATTCATCAAAGCAAGTTAAGTTGGGCTTTTTAGCAGGT
genomic: CCATCTGAGTGGTG-AA-TC-TA-TAGAAACACCTTTATTACAGGACCAAgtaaacttct ... tgttgtgaagGAATTGTCTGTTGATTCATCAAAGCAAGTTAAGTTGGGCTTTTTAGCAGGT