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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatagttgtcccatttttacatttaagaggattcttaatatttctacaactggctaccatactttttattatttctgaattgctaccaagccatg...

Basic information

species Glycine max
transcript GLYMA11G11670.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g15880.1 (Oryza sativa), 5'ss of exon 4
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatagttgtcccatttttacatttaagaggattcttaatatttctacaactggctaccatactttttattat--ttctga-attgc-taccaagccatg--------------------------------------
|||||||||||| || |||||||| |||||||||||| | ||||| ||  |||| || |||||||| |||||||| || |||||  |||| || || ||||||| || |  |||   ||    |  |    || |     |        ||||  | |  |  | |  || ||| ||  || ||  ||||| |  | ||  |                                        
TATTGAAGCCAAACAGGTTGCTGCACAAGAAGCTGAGCGTGCTAAGTTCATTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaa-atctgttttatagccat-tgcctgatgtcatgtgccggagatacagtttgacagtacatattatataatggttttgccattgcatgtctagttaacattgtctcttaaacatggcctttctcttctttcaacag

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g62490.1 (Oryza sativa), 5'ss of exon 4
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatagttgtccca---tttttacatttaagaggattcttaatatttctacaactggctaccatactttttattatttctg-aattgctaccaagccatg----------------------------------------------------------------------------------------
 |||||||||||||| |||||||| |||||||||||| | || || ||  |||| || || |||||||||||||| || |||||  | || ||||| |||||||  | || ||        | |||    || ||| |  | | |  || |       ||   |   ||||   | |  |||  |  |    |   ||| |||                                                                                         
AATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCAAAGTTCATTGTTGAGAAGGCTGAACAAGACAAGAGGAGTGCGATCATCAGAGCACAGgtaagcaaagatgcaatggattatttctggtttagatggctttcaccatattcct---tgataagtttactacctgtagttttagtgacaattgttaagacatatcaatggcactgtttatttcttcattgtttcatatatttcatttttgttggtgtgggttgagtctgactgtgaggcctgcttgaacag

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g60000.1 (Oryza sativa), 5'ss of exon 4
------------------------------------------------------------------------------------TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAA-TTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatagttgtcccatttttacatttaagaggattcttaatatttctacaactggctaccatactttttattatttctgaattgctaccaagccatg
                                                                                     |||||||||||||| |||||||| |||||||||||| | || ||| ||  |||| || || |||||||||||||| || |||||  | || ||||| |||||||  | || ||                                                                                       
GACAGAGAGGGCTAGCAACTTCAACATTGCTCTGGATGATGTGTCCATCACAAGTCTCAGCTTTGGAAAAGAGTTCACCCATGCAATTGAAGCCAAGCAGgttgctgcacaagaagctgagcgtgcaaaagttcattgttgagaaggctgaacaagacaagaggagtgcgatcatcagagcacaggtaagcaaagatgca-------------------------------------------------------------------------------------

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G145964_T01 (Zea mays), 5'ss of exon 1
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatagttgtcccatttttacatttaagaggattcttaatatttctacaactggctaccatactttttattatttctgaattgctaccaagccatg-
 |||||||| ||||| ||||| || || ||||||||| | ||||| ||  |||| || |||||||||||||| || ||||||||  |||| || ||||||||||  |      ||    ||||   |  |  |  ||      |||| ||  |  | |||    | |  ||     ||  |   ||   |    | | || 
CATTGAAGCGAAGCAGGTTGCGGCACAGGAAGCTGAGCGTGCTAAGTTCATTGTCGAGAAAGCTGAACAAGATAAGAGAAGTGCAATTATCAGGGCTCAGgtaaggaaccagttcatgattttggttgcatcatcataagatgtattgctg-agttagctctagtgcccttgtgatttatttttttttcaattcgtcttgt

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G352289_T02 (Zea mays), 5'ss of exon 3
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAA----GCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatagttgtcccatttttacat-----ttaagaggattcttaatatttc-tacaactggctaccata---ctttttattatttctgaattgctaccaagccatg
    ||||||||||| |||||||| ||||||    |||||| | ||||| ||| |||| || |||||||| ||||| || ||||||||  ||||||| |||||||||| ||     | | || | |||  |     ||   | |||| |   |   || ||        | |       | |  | ||||||   | ||||            
----GAAGCCAAGCAGGTTGCTGCACAAGAAGCAAGCTGAGCGTGCTAAGTTTATTGTTGAGAAAGCTGAGCAAGATAAGAGAAGTGCAATTATTAGGGCTCAGgtaagaa--accggctcactattaagtaattatttcaatgattttggttgcatcataaggtctattgctgagtgccctcatgttattttcaatttgccttgt-------

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
lower sequence: AC217358.3_FGT005 (Zea mays), 5'ss of exon 4
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatagttgtcccatttttacatttaagaggattctta-atatttctacaactggctaccatactttttattatttctgaattgctacca----agccatg
 |||||||||||||| |||||||| |||||||||||| | || || ||  |||| || || ||||| || |||||  | ||||| ||||| || || |||||     |||| | | |  |||    | ||||||  |||||   | |  ||  ||     ||  |           |     ||| ||| |  |    |  | ||
CATTGAAGCCAAGCAGGTTGCTGCACAAGAAGCTGAGCGTGCCAAGTTCATTGTTGAGAAGGCTGAGCAGGACAAGCGCAGTGCAGTTATCAGGGCACAGgt-----tagtggccaccctttcttgtgtaagagtgttcttttgtctggctggaaacaagtaaaacttacaaggaaaaaaaagaaatgccatgactttaatcgtg

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G28510.1 (Arabidopsis thaliana), 5'ss of exon 5
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatagttgtcccatttttacatttaagaggattcttaatatttctacaactg-gctaccatactttttattatttctgaattgctaccaagccatg
 |||||||| ||||| || || |||||||| |||||| ||||||| ||  |||| || || || ||||||||||| ||||||||||||||  | || |||||||| | | |     |||||  || | |||    |    | | |     |    || |  || | | ||   ||   || || |                
CATTGAAGCAAAGCAGGTGGCGGCTCAAGAGGCTGAGCGGGCTAAGTTCATTGTTGAGAAGGCCGAACAAGACAAGAGAAGTGCTGTTATCCGCGCCCAGgtaaagagattctctacatttccacttgtaatctaaactctgagagcgaaattgttgtgtgacgaaagttcacatggcttgtgtag---------------

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
lower sequence: AT2G20530.2 (Arabidopsis thaliana), 5'ss of exon 6
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgt---aaaaatagttgtcccatttttacatttaagaggattcttaatatttctacaactggctaccatactttttattatttctgaattgctaccaagccatg-------------------------------
 || ||||  ||||| || ||||||||||| || ||  ||||||| ||  |||| || ||||||||||| ||||| ||||||||||||||  | ||  ||||   |||| |  || || | ||| ||   ||   |  |      ||  |  || | || |||    |  || || ||  || |||| |  |   ||||  ||                               
CATAGAAGGAAAGCAGGTCGCTGCTCAAGAGGCCGAACGGGCTAAGTTCATTGTCGAGAAAGCTGAACAGGACAAGAGAAGTGCTGTTATCCGCGCCGAGgtgtgaaaagtgtttctctcttttctagcattttaaaaaccggagattgtgttaaagcttgcttttttttttcttttttgttgtgaactattttaaagct-tgctaactgatgtttctgcatgggtttatgtag

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G03860.3 (Arabidopsis thaliana), 5'ss of exon 5
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaa--aatagttgtcccatttttacatttaagaggattcttaatatttctacaactggctaccatactttttattatttctgaattgctaccaagccatg
||| || || || |||||||||||||| ||||||||  ||||||| ||  |||| || ||||| ||||||||||  |||||||| |||||  | || |||||| |  | | ||  ||    ||  | || |||    ||     | |||  |     ||||  |   |   ||   | ||| |||||   |    ||     
TATCGAGGCAAAACAAGTTGCTGCTCAGGAAGCTGAACGGGCTAAGTTCATTGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAGgtatagcattggtgatcttgattgcaaatctaatgacat----gagattagtggttttggc--ctgaagcattagctctttttgaatctttgtgcag-----

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0085g00730.t01 (Vitis vinifera), 5'ss of exon 6
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaat----agttgtcccatttttacatttaagaggat---tcttaatatttctacaactggctaccatactttttattatttctgaattgctaccaagccatg
||||||||| || ||||| ||||| ||||| ||||| ||||| ||||||||||| ||||||||||| |||||||| || |||||| |||| ||||| ||||| | ||     |   |  ||||   | |  |    |       ||||  | |   |  ||   ||| |  |  || || | |  |  || || ||||||       
TATTGAAGCTAAACAAGTGGCTGCACAAGAGGCTGAAAGGGCCAAATTTGTTGTGGAAAAAGCTGAGCAAGACAAGAGGAGTGCTATTATCAGAGCACAGgtgagaaataaaaaacggtccatccatgccctaggaaatgcagatctttgtttccatttaagctgctgcagtg-ttgttctgaactaggattttctaccat------

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0048g02350.t01 (Vitis vinifera), 5'ss of exon 6
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaat----agttgtcccatttttacatttaagag---gattcttaatatttctacaactggctaccatactttttattatttctgaattgctaccaagccatg
|||||| || || ||||| ||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||| |  |||||| |||| ||||| ||||| | ||     |  ||  ||||   |||  | |  |     | ||||  | |   |  ||   ||| |  |  | |  | ||     || || || |  | |||| 
TATTGAGGCTAAACAAGTGGCTGCACAAGAAGCTGAAAGGGCCAAATTTGTTGTGGAAAAAGCTGAGCAAGACAAGAAGAGTGCTATTATCAGAGCACAGgtgagaaataaaaaatggtccatccataccctaagaaatgcaaatctttgtttccatttaagctgctgcagtgttctgaactag----gattttctgc--aaccat-

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S144_113V6.1 (Physcomitrella patens), 5'ss of exon 2
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaa---aaatagttgtcccattt---ttacatttaagaggattcttaatatttctacaactggctaccatactttttattatttctgaattgctaccaagccatg------------------------------------------------------------
| | |||||||||||||||||||||||||| |||||||| || || ||||| || || |||||||||||||||||| |||||||| ||||| | ||||||||     |   | ||||    |||   |||  |||  ||||    ||   ||    |  |  | |  ||  |  ||||  | ||      | | | |    |  |                                                             
TTTCGAAGCCAAGCAAGTTGCTGCTCAAGAGGCTGAGAGTGCCAAGTTTGTAGTGGAGAAAGCTGAACAAGACAAACGAAGTGCTATTATTCGTGCTCAGgtgctttagccatttgtattgtttcagttatgtttctgaggtagtttttaatggagattatcgtcctccgaagcttttgatgttggcatttggtttctcttcttttgaatagagtagcgtcattaattgtgaaaggtttttaagtttcttttgttgtatatctcag

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S215_63V6.1 (Physcomitrella patens), 5'ss of exon 4
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaa---aaatagttgtcccatttt---tacatttaagaggattcttaatatttctacaactggctaccatactt----tttattatttctgaattgctaccaagccatg-------------------------------------------------
|||||| |||||||||||||||||||| || || ||||| || || ||||| || || ||||| || || ||||||||||||||| | ||| | ||||||||     |   | || |    |||    |    |||| |   ||  | | | |  |  |  | ||     |   |    |||  | | | || |||   ||  |||                                                     
TATTGAGGCCAAGCAAGTTGCTGCTCAGGACGCGGAGAGAGCCAAGTTTGTGGTGGAGAAAGCAGAGCAGGACAAAAGAAGTGCTATCATTCGTGCTCAGgtgctttagccatttctattgtttcagctgtggttaataacgttactgaaactgttgaatttcgcatttgtgtctgtcgtttggtttgtgtgcattcgaactgagcagcatcatcaagtgctgaaaaggtcgaaatttttgttttcgtgtgtacctcag

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S41_59V6.1 (Physcomitrella patens), 5'ss of exon 4
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatagttgtcccatttttacatttaagaggattcttaatatttcta-caa-----ctggctaccatactttttatt--atttctgaattgctaccaagccatg---------------------------------------------------
||||||||||||||||||||||||||| || ||||||||||| || ||||| || || || || || || ||||||| ||||||  | ||  | ||||||||      |   ||||| || || || |||      ||  | |  |   || |||     || | |    |||| |   ||   ||  |  ||| || | ||     |                                                   
TATTGAAGCCAAGCAAGTTGCTGCTCAGGACGCTGAGAGGGCCAAGTTTGTGGTGGAGAAGGCAGAGCAGGACAAAAAAAGTGCCATCATCCGTGCTCAGgtgctt-cacacgtccccttgtttcagttatttcagtttctgaggtggttagcaagtttcctagatgttgtactctgagttctgttcttttatttcttctaaatagaggtctatcatcaaatttgagctggtattgatgaatgtatgtgtgtacttcag

upper sequence: GLYMA11G11670.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S14_33V6.1 (Physcomitrella patens), 5'ss of exon 4
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatagttgtcccatttttacatttaagaggattcttaatattt----------ctacaactggctacc-atactttttattatttctgaattgctaccaa-gccatg-----------------------------------------
 |||||||| |||||||||||||| || || |||||||||||||||||||| || || || || || || |||||||| |||||  ||||| | ||||||||        ||| | | |  ||   ||      | |  |||   |||           |  ||  ||||    ||  |  |  | ||| |  ||     ||||  |||| |                                         
AATTGAAGCTAAGCAAGTTGCTGCCCAGGACGCTGAGAGGGCTAAATTTGTGGTGGAGAAGGCAGAGCAGGACAAAAGGAGTGCAATTATTCGTGCTCAGgtgctttatcttgactcttgcttgatttctttcagctatttacagtttgggaaggggtttgtaagaggctgtggatgttggtgttcattccgcaaggaagaccattgccaagtttggtcggatagtgaaatttcctttttttgtgtactccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712868|gb|BW679145.1|BW679145
EST:     TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG                         GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: gi|21677297|gb|BQ629648.1|BQ629648
EST:     GAAAAAGCTGACCAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG                         GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
genomic: GAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: gi|192299408|gb|FG992526.1|FG992526
EST:     TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG                         GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: gi|192301953|gb|FG995571.1|FG995571
EST:     TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCGG                         GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: gi|192327782|gb|FK022397.1|FK022397
EST:     TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG                         GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: gi|15287791|gb|BI471682.1|BI471682
EST:     TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG                         GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: gi|209728795|gb|BW666832.1|BW666832
EST:     TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG                         GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: gi|12688335|gb|BG154671.1|BG154671
EST:     TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG                         GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: gi|23735502|gb|BU766034.1|BU766034
EST:     TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAG                         GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
genomic: TTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
EST: gi|21256250|gb|BQ453138.1|BQ453138
EST:     AGAAGTGCTGTTATTAGAGCTCAG                         GGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT
genomic: AGAAGTGCTGTTATTAGAGCTCAGgtaaaaatag ... tgacaaacagGGTGAAGCCAAGAGTGCCCAGTTGATTGGTGAAGCTATTGCCAATAATCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATTGAAGCCAAGCAAGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCTCAGgtaaaaatagttgtcccatttttacatttaagaggattcttaatatttctacaactggctaccatactttttattatttctgaattgctaccaagccatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA