1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAGGGTGGAGACATTGTTCATCATGATGGTAAAGGGTCTGAATCTATTTTTGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCCGgtgagtaacaatttgcttggatgaaagcatttcattttattattaatatttttataacttgatgtttttctgtcatttctaagatatgtgtttgagttgtttctatgaaatcttactcccatgattgcag
species | Glycine max |
transcript | GLYMA11G11370.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATCCTCATGCCG GAGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTTEST: gi|192301026|gb|FG987981.1|FG987981
genomic: TGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCCGgtgagtaaca ... atgattgcagGAGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTT
EST: TGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCCG GAGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTTEST: gi|163921467|gb|EH038979.1|EH038979
genomic: TGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCCGgtgagtaaca ... atgattgcagGAGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTT
EST: TGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCCG GAGTTGTTTCTATGGCAAATTCAGGACCTGATACCAATGGCTCACAGTTTTEST: gi|120533708|gb|EH261841.1|EH261841
genomic: TGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCCGgtgagtaaca ... atgattgcagGAGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTT
EST: TGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCCG GAGTTGGTTCTATGGCAAATTCAGGACCTGATTCCAATGGGTCAACAGTTTEST: gi|151406317|gb|EV276132.1|EV276132
genomic: TGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCCGgtgagtaaca ... atgattgcagGAGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCA-CAGTTT
EST: TGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCCG GAGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTTEST: gi|192306070|gb|FG993660.1|FG993660
genomic: TGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCCGgtgagtaaca ... atgattgcagGAGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTT
EST: TGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCCG GAGTTGTTTCTATGGCAAAT
genomic: TGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCCGgtgagtaaca ... atgattgcagGAGTTGTTTCTATGGCAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGGTGGAGACATTGTTCATCATGATGGTAAAGGGTCTGAATCTATTTTTGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCCGgtgagtaacaatttgcttggatgaaagcatttcattttattattaatatttttataacttgatgtttttctgtcatttctaagatatgtgtttgagttgtttctatgaaatcttactcccatgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG