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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGATgtaaatccgagatgcctagtttctttttgcatgtcagaatttatatcctcatgctgattctttttttcttttgaacaattgtatag

Basic information

species Glycine max
transcript GLYMA11G10770.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g10600.1 (Oryza sativa), 5'ss of exon 5
ATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGATgtaaatccgagatgcctagtttctttttgcatgtcagaatttatatcctcatgctgattctttttttcttttgaacaattgtatag
  | || ||||| || || ||||||||||| ||||| || |||||||||||||||||||||  || ||| ||||| || || |||||||     |       | ||||||||| |||||||     | | ||   || |||| ||  |  |    |  |            
GCTTCCTGATGGATCTCTTATGGAGATTACAAAAGTCTACCCATTGGATGCAGTTTTTGACTCTCCTGAGGATGTTCCTGATGATgtaatgttca-----tcattttcttttttcatgtcaactcctgt-tctgtattctgaatcggtcctctggtgtag-----------

upper sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 5
ATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGATgtaaatccgagatgcctagtttctttttgcatgtcagaatttat-atcctcatgctgattctttttttcttttgaacaattgtatag
 || |||||||||||  |||||||||| |||||| | ||||| ||||||||||||| |||||  ||||| ||||| || ||||||||||    ||  |   | ||    |  |  || | | || |  | |    ||| || | | | |  || ||||       | |  ||
GTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGCAGTTTATGACACCCTTGAGGATGTACCTGAAGATgtaagaaagaagtttattgtcctataataaatatgaaaaatggtcaagtgcatcctcagtatatcattgttttatgagtctatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986202|gb|BE660310.1|BE660310
EST:     TTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGAT                         ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG
genomic: TTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGATgtaaatccga ... aattgtatagATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG
EST: gi|192307619|gb|FG999658.1|FG999658
EST:     TTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGAT                         ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGT
genomic: TTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGATgtaaatccga ... aattgtatagATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGT
EST: gi|7796512|gb|AW781909.1|AW781909
EST:     TTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGAT                         ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG
genomic: TTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGATgtaaatccga ... aattgtatagATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG
EST: gi|15204411|gb|BI427179.1|BI427179
EST:     TTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGAT                         ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG
genomic: TTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGATgtaaatccga ... aattgtatagATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG
EST: gi|9899327|gb|BE608295.1|BE608295
EST:     TTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGAT                         ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG
genomic: TTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGATgtaaatccga ... aattgtatagATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG
EST: gi|19053059|gb|BM731726.1|BM731726
EST:     TTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGAT                         ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG
genomic: TTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGATgtaaatccga ... aattgtatagATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGTTCAG
EST: gi|192306220|gb|FG995056.1|FG995056
EST:     TTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGAT                         ATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGT
genomic: TTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGATgtaaatccga ... aattgtatagATAAAAGCAAACAAGCGCTATGCCGGTTCATCTAAATGGACAGT