Sequence
atgc intronic sequence ATGC exonic sequenceTACAACCTGTAGGTGTTTCACGCAGAATAAGAAAACTTGTGCAGAGCCATCAGGTTCCTGATCTAAGGAATCTTCTAGATGTTAGTAATTTTGTCACAAAgtaagatacttgcttattcattcaagttttcatttttcttttcctttttgaatgacgaactgagagagctggtatgatccatttgacctttgcatggcac...
Basic information
species | Glycine max |
transcript | GLYMA11G10700.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G10700.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G61770.3 (Arabidopsis thaliana), 5'ss of exon 6
TACAACCTGTAGGTGTTTCACGCAGAATAAGAAAACTTGTGCAGAGCCATCAGGTTCCTGATCTAAGGAATCTTCTAGATGTTAGTAATTTTGTCACAAAgtaagatacttgcttattcattcaagttttcatttttcttttcctttttgaatgacgaactgagagagctggtatgatccatttg--acctttgcatggcac
| || ||||| || || || || || || ||||| ||||||| | ||||||||||| ||||| |||||||| | ||||||||| |||||||||| ||||||| | | | ||| |||| || ||| || | | || ||| | || || | | || | |||| | | || ||
TTCAGCCTGTTGGAGTATCTCGTAGGATCAGAAAGTTTGTGCAAAATCATCAGGTTCCAGATCTTAGGAATCTGCAGGATGTTAGTGATTTTGTCACCAAgtaagg-atctac--attggttcag----tctgtttgctgcatcgatgtggatggattaatgtgacatttcgtctttcttttttgttgtccctttttgtcag
upper sequence: GLYMA11G10700.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0005g00470.t01 (Vitis vinifera), 5'ss of exon 5
TACAACCTGTAGGTGTTTCACGCAGAATAAGAAAACTTGTGCAGAGCCATCAGGTTCCTGATCTAAGGAATCTTCTAGATGTTAGTAATTTTGTCACAAAgtaag--atacttgcttattcattcaagttttcatttttctt-----ttcctttttgaatgacgaactgagagagctggtatgatccatttgacct-ttgcatggcac
|||||||||| ||||| || ||| | |||||| ||||||||| |||||| ||||||||||||| |||||| | ||||| ||| | ||| | |||||||||| || ||| ||||| ||| |||||| | || | || | | |||| || | || | || || || | |||
TACAACCTGTTGGTGTCTCCAAGAGAGTTAGAAAATTTGTGCAGAACCATCAAGTTCCTGATCTAAAGAATCTGCAGGATGTCAGTGACTTTATTACAAAgtaaggaatccttttttattgattttttttttcaggacaaaaaaaagtgaattcatctgtggcataaagagaatgcaaatttg-tacagttaacatgttgt-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15200037|gb|BI424139.1|BI424139EST: CAGGTTCCTGATCTAAGGAATCTTCTAGATGTTAGTAATTTTGTCACAAA GGCTGGCTATGGATCAGAAAGTGAAGCTGATGAAGAAGCAGCAACAGTTAC
genomic: CAGGTTCCTGATCTAAGGAATCTTCTAGATGTTAGTAATTTTGTCACAAAgtaagatact ... gatttgtaagGGCTGGCTATGGATCAGAAAGTGAAGCTGATGAAGAAGCAGCAACAGTTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACAACCTGTAGGTGTTTCACGCAGAATAAGAAAACTTGTGCAGAGCCATCAGGTTCCTGATCTAAGGAATCTTCTAGATGTTAGTAATTTTGTCACAAAgtaagatacttgcttattcattcaagttttcatttttcttttcctttttgaatgacgaactgagagagctggtatgatccatttgacctttgcatggcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA