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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTCCGTAATAATTGGCACTGGTACCAATGCTTGCTATTTGGAACGGGTTGATGCTATTATCAAGTGTCAAGGTCTTCTTACAGCATCAGGATACATGgtactgttcatgttttttaattttcaattttgtttattgtctattgttttgagcttattataactcttctgtttattag

Basic information

species Glycine max
transcript GLYMA11G10130.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G467069_T02 (Zea mays), 5'ss of exon 5
TGCTTCCGTAATAATTGGCACTGGTACCAATGCTTGCTATTTGGAACGGGTTGATGCTATTATCAAGTGTCAAGGTCTTCTTACAGCATCAGGATACATGgta----ctgttcatgtttttt----------aattttcaattttgtttattgtctatt----------gttttgagcttattataactcttctgtttattag
 ||| | || || |||||  |||| ||||||||||||||| | |||||   |||||| ||||| || ||||| ||||||||||||   || ||   |||||||    |||||  || ||| |          |||| ||||| | ||  ||| |  |||           |   |  ||||||  ||   |    | | | ||
GGCTGCTGTGATCATTGGTGCTGGCACCAATGCTTGCTATATTGAACGCACTGATGCAATTATTAAATGTCAGGGTCTTCTTACAAACTCTGGTGGCATGgtatattctgttgctgctttgttcagtactcaaattatcaatatcgtcgatttttcatttggacaaaagatgcagttcttattgaaatcttcaattctgtcag

upper sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G068913_T01 (Zea mays), 5'ss of exon 5
TGCTTCCGTAATAATTGGCACTGGTACCAATGCTTGCTATTTGGAACGGGTTGATGCTATTATCAAGTGTCAAGGTCTTCTTACAGCATCAGGATACATGgtactgttca---------------tgttttttaattttcaattttgtttatt------gtctattgttttgagcttattat--aactcttctgtttattag
 ||| | || ||||| ||  |||| ||||||||||||||| | |||||   |||||| ||||| || ||||| ||||||||||||   || ||   ||||||| | |||                ||| |   |||| ||||| |  |  |||      ||  |      ||   || ||||  ||   |||  || || ||
GGCTGCTGTGATAATCGGTGCTGGCACCAATGCTTGCTATATCGAACGCACTGATGCAATTATTAAATGTCAGGGTCTTCTTACAAACTCTGGTGGCATGgtattattctcttgctgctttgctctgtatccaaattatcaatatcatcgatttatcctgtggacaaagatgtagttcttattcaatcgttcaattcatcag

upper sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 5
TGCTTCCGTAATAATTGGCACTGGTACCAATGCTTGCTATTTGGAACGGGTTGATGCTATTATCAAGTGTCAAGGTCTTCTTACAGCATCAGGATACATGgta-ctgttcatgttttttaattttcaattttgtttattgtctattgttttgagcttattataactcttctgtttattag-----------------------------
|||| | || |||||||| || ||||| ||||| |||||||||||||||   ||||||||||| |||||||| || ||||||||| | || |||  ||||||| |  ||| || ||||  | |   |  ||   | |   |  ||| ||  ||    |   | | |||||| |||||||                              
TGCTGCAGTGATAATTGGGACAGGTACAAATGCCTGCTATTTGGAACGGACAGATGCTATTATTAAGTGTCAGGGCCTTCTTACAACTTCTGGAGGCATGgtatcctttcttgattttctagtcatacattacctaacactgcatttttgagaataaagactgattcttctatttattatttgacttcatgtcatcttccattcgttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207848853|gb|GD818884.1|GD818884
EST:     TTGATGCTATTATCAAGTGTCAAGGTCTTCTTACAGCATCAGGATACATG                         GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACA
genomic: TTGATGCTATTATCAAGTGTCAAGGTCTTCTTACAGCATCAGGATACATGgtactgttca ... tgtttattagGTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACA
EST: gi|207829107|gb|GD798097.1|GD798097
EST:     TTGATGCTATTATCAAGTGTCAAGGTCTTCTTACAGCATCAGGATACATG                         GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACA
genomic: TTGATGCTATTATCAAGTGTCAAGGTCTTCTTACAGCATCAGGATACATGgtactgttca ... tgtttattagGTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACA