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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAAATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGACATGAAACCAGAGgtgtggtcaagtttgctggcatatctacgcaatatggagttgtgtaattttactctatatattaaatttttcctctttgcatgcag

Basic information

species Glycine max
transcript GLYMA11G08180.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08180.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g22710.3 (Oryza sativa), 5'ss of exon 3
TTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAAATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGACATGAAACCAGAGgtgtggtc---aagtttgctggcatatctacgcaatatggagttgtgtaattttactctatatattaaatttttcctctttgcatgcag
|||||  || |||||||| || || |||||  |||||||||| |||||||| |||||||| ||||| ||||| ||||| || ||||||||||| || ||||| || ||   ||||        |  ||| |  |  |  |   |   | |||| | | | | |||| |                     
TTATAGCGAGAAAGATGCTGCAGTAGTTGTGCGGCAAATGCTCAAGGTTGCTGCTGAGTGCCATTTGCATGGTTTGGTTCATCGGGACATGAAGCCTGAGgtatgctctaaaagtacaagactaagtcttcttataagagtaattgatcatttga-tatgtgtatttacag------------------

upper sequence: GLYMA11G08180.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G365035_T01 (Zea mays), 5'ss of exon 4
TTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAAATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGACATGAAACCAGAGgtgtggtc---aagttt--gctggcatatctacgcaatatggagttg----tgtaattttactctatatattaaat--ttttcctctttgcatgcag
||| |  || |||||||| || || |||||  | || ||||| |||||||| |||||||| ||  | ||||| ||||| || |||||||||||||| ||||| |  ||   |||| |  | | | ||     |  ||   | |||||    |    ||||| |  |   | ||  |  |  || | || |  || ||
TTACAGCGAGAAAGATGCTGCAGTAGTTGTCCGACAGATGCTCAAGGTTGCAGCTGAGTGCCACCTGCATGGTTTGGTTCATCGGGACATGAAACCTGAGgtatactctgaaagtataagatagaatcctgtcataaatagtagttgctaatacctttttattaaaaggagtagctaataatcttattggtgtgtag

upper sequence: GLYMA11G08180.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G17890.1 (Arabidopsis thaliana), 5'ss of exon 4
TTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAAATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGACATGAAACCAGAGgtgtggtcaagtttgctggcatatctacgcaatatggagttgtgtaattttactc-tatatattaaatttt-----tcctctttgcatgcag
|||||  || | ||| || || ||||| || || |||||||| || ||||||||||||||||||||||  || ||||| ||||| || ||||||||||||||  | | || |   |   |||       |   |||    |   |  ||||| ||  |  ||||   ||||     || ||||  ||  |||
TTATAGCGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTTGGTTCACCGAGATATGAAACCAGAGgta-gcttaattactccatcatcatgtttctgaatgtgtatagttggttttattcacaagtattgttttttactaatcatcttctcaaacag

upper sequence: GLYMA11G08180.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g03420.t01 (Vitis vinifera), 5'ss of exon 4
TTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAAATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGACATGAAACCAGAGgtgtggtcaagtttgctggcatatctacgcaatatggagttg---tgta---attttactctata-----tattaaatttttcctctttgcatgcag
||||| ||| |||||||||||    ||||||||||| ||||| || ||||| ||||||||||||||||||||  |||||||||| ||||||||||||||||| |  | ||||||||||||| |  |    | | |||  ||    ||||   ||| | |   ||      |     |  |||  |  | ||||| ||
TTATAGTGAGAAAGATGCAGCAAAAGTTGTAAGGCAGATGCTCAAAGTTGCAGCTGAGTGTCATTTACATGGTCTGGTACACCGTGACATGAAACCAGAGgtataatgaagtttgctggcacacatcaaaattttggctttaatttgtagccattatgcctaatggtgcttcccttacatttttttatcgcatgtag