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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCCCACATATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGgtacatactttggatatcaaatgctgatctattattgcttttttttcttcctcctacaattccacattactaatactttctgctttatatttttggtttgttctttag

Basic information

species Glycine max
transcript GLYMA11G07910.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 5
ATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCCCACATATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGgtacatactttg-gatatcaaatgctgatctattattgcttttttttcttcctcctacaattccacattactaatactttctgctttatatttt-tggtttgttctttag
||||||| ||||||| ||||| |||||||||||||| ||||| || || | ||| |||| ||  ||||| |||||| |  ||||||| || ||||| |||||| ||||     |||||  ||     || |  |     ||| |||      |  |    |||||   |   | | ||||    | | |||||| | |            
ATCAACTCTAGCTACTTTTGTAGCTGTATATGCACTTTTTGGACCAACTTTTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaagaagatatttaagcaaaattttgttcatttttctttgaaaatttgttttcttccatgctgagatttctttggtgtctgtattttgtag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207846669|gb|GD819994.1|GD819994
EST:     TCCTGGAATTTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCG                         GGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
genomic: TCCTGGAA-TTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGgtacatactt ... tgttctttagGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
EST: gi|13791595|gb|BG654186.1|BG654186
EST:     ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCG                         GGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
genomic: ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGgtacatactt ... tgttctttagGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
EST: gi|23052777|gb|BU577268.1|BU577268
EST:     ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCG                         GGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
genomic: ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGgtacatactt ... tgttctttagGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
EST: gi|213595247|gb|DB963980.1|DB963980
EST:     ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCG                         GGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
genomic: ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGgtacatactt ... tgttctttagGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
EST: gi|7233548|gb|AW568953.1|AW568953
EST:     ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCG                         GGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
genomic: ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGgtacatactt ... tgttctttagGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
EST: gi|207846938|gb|GD819479.1|GD819479
EST:     ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCG                         GGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT
genomic: ATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGgtacatactt ... tgttctttagGGACTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGACTGCTGTCAT