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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttccctcctccttgctttctgtttttcatttgcattgggacaatgaagaagtgagggtctattctgaaaaaatttaaaaggctacccattaaa...

Basic information

species Glycine max
transcript GLYMA11G07530.4
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07530.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g47600.1 (Oryza sativa), 5'ss of exon 6
GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc-cctcctccttgctttctgtttttcatttgca-----ttgggacaatgaagaagtgagggtctattctgaaaaaatttaaaaggctacccattaaa
||||  ||  | ||||| |  ||||| || |||||||||||||| || |||||||||||||| ||||| |||   |  |   |||||||||| | |||       | |      |    |  ||   |  ||   ||   || ||  | |  | |     | |  | |    
GAACAAGTTGTCCCTGGATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGgttaaatcccatcatgtccttgctttttttttagagaggggaaattcctccatccttggttacatggaagttgcttttgttaga--taaggtttccatgctt----

upper sequence: GLYMA11G07530.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G18230.1 (Arabidopsis thaliana), 5'ss of exon 6
GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaa--aagttccctcctccttgctttctgtttttcatttgcattgggacaatgaagaagtgagggtc-tattctgaaaaaatttaaaaggctacccattaaa
|| || |||||  | || || ||||| ||||| ||||||||||| |||||||| |||||||| |||||||  ||    | |   ||    | |   | | |    || |||     | | |  ||    |  ||   || |    ||| ||  |               
GAGCCTGTGCTAACCGGATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaactcttaaacccaattctacctctatgtaatgtattaccttagtaagaaaccaggaatcaccttgttctgaaacttgcag--------------

upper sequence: GLYMA11G07530.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g02050.t01 (Vitis vinifera), 5'ss of exon 5
GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttccctcctccttgctttctgtttttcatttgcattgggacaatgaagaagtgagggtctattctgaaaaaatttaaaaggctacccattaaa-
|| || || || |||||||| || |||||||||||||| |||||| |||||||||||||||| |||||||||      || | ||   | |   |||||  | |  |     | |||       ||||     | | | |   |||  ||| || |    |  ||| 
GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATGCCTATGATTGATCAGgtaaaaaaaatttctttctctgtctaactttttattcttgacatccagaatcttcttttgagtaaacactattacccaatc-aaagggttgtttaggaaaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22928719|gb|BU545858.1|BU545858
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|254328447|gb|GR835412.1|GR835412
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|192310086|gb|FK000650.1|FK000650
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|10254828|gb|BE822594.1|BE822594
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|31469770|gb|CD411798.1|CD411798
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|192333274|gb|FK026155.1|FK026155
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|58022382|gb|CX709123.1|CX709123
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|22930561|gb|BU547700.1|BU547700
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|192323914|gb|FK015665.1|FK015665
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|192321262|gb|FK014352.1|FK014352
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|192325458|gb|FK018399.1|FK018399
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|58018488|gb|CX705230.1|CX705230
EST:     GTTCCTTCNTTCGTGCTCGTGCTATTGGACTAATGCNTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCNTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|192316544|gb|FK009313.1|FK009313
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
EST: gi|193495770|gb|FK461108.1|FK461108
EST:     GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAG                         GGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC
genomic: GTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaaaagttc ... tctgctacagGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTTC