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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGGGTAGGCCTACCATGGATTGGGCAACTAGAATGCGGATTGCAATAGGATCCGCTAAAGGGCTTGCTTATCTTCATGAGGACTgtaagagtcacatccctctagcttatgatctttctttttcttattcattttcttctctgtttatatttttcatttttgctgtattttcatgtacactttag

Basic information

species Glycine max
transcript GLYMA11G07180.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07180.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g01570.t01 (Vitis vinifera), 5'ss of exon 3
GAAAGGGTAGGCCTACCATGGATTGGGCAACTAGAATGCGGATTGCAATAGGATCCGCTAAAGGGCTTGCTTATCTTCATGAGGACTgtaagagtcacatccctctagcttatgatctttctttttcttattcattttcttctctgtttatatttttcatttttgctgtattttcatgtacactttag
     ||| | || | |||||||||||||| ||| ||||| |||||| | ||||| || |||||||||||||| |||||||| ||||||||||  | |    | |  |        |  | || ||||  |    | |||    | || || | ||  |    ||| |                    
----TGGTCGACCGATCATGGATTGGGCAAGTAGGATGCGTATTGCATTGGGATCGGCCAAAGGGCTTGCTTACCTTCATGAAGACTgtaagaaactcgcatcccctgtcc----ccccttttcttctcctcttctctctctcatattcatttgttaaacgcatgcag--------------------