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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCATATAATGTTGGGGGTCATACAATTAGTGCAGACACAATACAAAATACTATACTCAAGTGTCGGATGTCTCGCCCGGGACAGgtgaatcctatgttcccaattacttccctatgaaaaaacaaaggagagaaaaaatacatttgaaattccattcaaatatacttttaaaacaaaggagtatttgttattatttattaattctagacactggtgatttacatggtcgcttcttcaaatttgcttcctcttgcag

Basic information

species Glycine max
transcript GLYMA11G06610.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06610.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 8
GCTGCATATAATGTTGGGGGTCATACAATTAGTGCAGACACAATACAAAATACTATACTCAAGTGTCGGATGTCTCGCCCGGGACAGgt-gaatcctatgttcccaattacttccctatgaaaaaacaaaggagagaaaaaatacatttgaaattccattcaaatatacttttaaaacaaaggagtatttgttattatttattaattctagacactggtgatttacatggtcgcttcttcaaatttgcttcctcttgcag
||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||| | || ||    ||||| || ||||| || |||||||| | |||| |||   | |     ||| |  |  || |    |    ||     ||  || | ||  |  | |  |||||   |||   |     | ||||||| |   ||                                                              
GCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAGgttggatcccatgccacta-----ttctcagttcaagatttta----agctcttatgtatattaacgtatactttaatat--cttttgtatggccgtgtatttgcttacat--------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21601375|gb|BQ611706.1|BQ611706
EST:     ACACAATACAAAATACTATACTCAAGTGTCGGATGTCTCGCCCGGGACAG                         TGGCTGCGCTTGTTATTTTCTCAAAGTACAAAATTCAAAGCTGGAGATAGA
genomic: ACACAATACAAAATACTATACTCAAGTGTCGGATGTCTCGCCCGGGACAGgtgaatccta ... cctcttgcagTGGCTGCGCTTGTTATTTTCTCAAAGTACAAAATTCAAAGCTGGAGATAGA
EST: gi|14259677|gb|BG882585.1|BG882585
EST:     ACACAATACAAAATACTATACTCAAGTGTCGGATGTCTCGCCCGGGACAG                         TGGCTGCGCTTGTTATTTTCTCAAAGTACAAAATTCAAAGCTGGATATAGA
genomic: ACACAATACAAAATACTATACTCAAGTGTCGGATGTCTCGCCCGGGACAGgtgaatccta ... cctcttgcagTGGCTGCGCTTGTTATTTTCTCAAAGTACAAAATTCAAAGCTGGAGATAGA