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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGCTGTGGTCTGGGCTTGAAAATTTTGTTTTTGACTGGTTAATAAATGCAGACAGgtaatgctgtgctagatccctgtattgtgctcatagttaatataaaaatattttataataaaactgtagtcactgccaaagcaattgggccagtcactga...

Basic information

species Glycine max
transcript GLYMA11G06550.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06550.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G15680.1 (Arabidopsis thaliana), 5'ss of exon 6
AGAAGCTGTGGTCTGGGCTTGAAAATTTTGTTTTTGACTGGTTAATAAATGCAGACAGgtaatgctgtg-----ctagatccctgtattgtgctcatagttaatataaaaatattttataataaaactgtagtcactgccaaagcaattgggccagtcactga------------------------
||||||| |||||||| ||||| || ||||||||||| ||| |||| || || |||||||| || | |      || || |  |  | | |  |   | |   || | |  | ||||||  |    |  |  |   |      | ||       | |  || |                        
AGAAGCTATGGTCTGGACTTGAGAACTTTGTTTTTGATTGGCTAATCAACGCTGACAGgtagtgatttcagaatctggaacggttgaattttatatgattcgctaaacacttcttttatcctttggcattcctttttcgagttgtaaaaacctgaatttctaagttctgggtgcttctccgttacag

upper sequence: GLYMA11G06550.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0083g00750.t01 (Vitis vinifera), 5'ss of exon 5
AGAAGCTGTGGTCTGGGCTTGAAAATTTTGTTTTTGACTGGTTAATAAATGCAGACAGgtaatgctgtgctagatccctgtattgtgc---tcatagttaatataaaaatattttataataaaactgtagtcactgccaaagcaattgggccagtcactga-
| ||||| ||||||||||||||||||||||| ||||| ||| |||| ||||| |||||||||    ||  |||||   ||  |  | |   | | | || |  |        ||  || |    ||    |      || |||||     | ||| | ||| 
AAAAGCTTTGGTCTGGGCTTGAAAATTTTGTCTTTGATTGGCTAATCAATGCTGACAGgtaagatggttatagatgggtgggtcttacattttaaacttcaagtggtgg-gcttgctagtgtgtcttgcatatgcttcatagcaa--aatcgagtta-tgat