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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTCCATTGATAGCCTTGAGAAGGAACGAGATTTCTACTTCGCAAAGCTGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactgtgctttcatactctataatttgaatgctttgatttgctttgattagtgaaacacaataatcggtattactattaggtaatgatcatatgtgatttgattgctgtttgtgtttcag

Basic information

species Glycine max
transcript GLYMA11G05560.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05560.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G163409_T02 (Zea mays), 5'ss of exon 4
GTTGTCCATTGATAGCCTTGAGAAGGAACGAGATTTCTACTTCGCAAAGCTGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactgtgctttcatact-ctataatttgaatgctttgatttgctttgattagtgaaacacaataatcggtattactattaggtaatgatcatatgtgatttgattgctgtttgtgtttcag
| |     | |||||||| ||||||||  |||||||||||||| | |||||| | || ||||||||  ||||||| |  |||||| | || |||   |||||    | ||  | | |  |||| || ||||   |||       ||  ||   |    || ||    | ||||    | | | | | ||| || | ||||     |  | ||  ||| ||||
GCTCCTTGTGGATAGCCTGGAGAAGGAGAGAGATTTCTACTTCTCCAAGCTGCGGGACATTGAGATCTTGTGCCAAAACCCTGAGGTTGAGCACGTGCCGgtgagttactgccttgcggctatcatctgaaatttttttccctgttgtatccattcttcagaa----ctgtatcgtgagtcg-tgacgatgat-tatgatggtggtcgtcttcttgtctcag

upper sequence: GLYMA11G05560.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0129g01080.t01 (Vitis vinifera), 5'ss of exon 5
GTTGTCCATTGATAGCCTTGAGAAGGAACGAGATTTCTACTTCGCAAAGCTGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactgtgctttcatactctataatttgaatgctttgatttgctttgattagtgaaacacaataatcggtattactattaggtaatgatcatatgtgatttgattgctgtttgtgtttcag
| |||| || |||||||||||||||||  | || |||||||| |||||  |||| |||||||| ||  ||||||||  ||| ||||| ||||||| | | |||  ||  | | |          || ||  ||||| |   | ||   ||  | |  |  |||||     |  |  | ||   | |||      |||  ||   | |||||||        
GCTGTCAATAGATAGCCTTGAGAAGGAGAGGGACTTCTACTTTGCAAAATTGAGGGATATTGAAATTTTGTGCCAGTGTCCAGAGATTGAACACTTAACTgtatggttttctga------gcgcttcgag-gctttaa---gattaatttcataatgcttaataacta--aacatgagtaaccactgactgctagtgtcttctgtcctgtttgcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326044|gb|FK016916.1|FK016916
EST:     TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCG                         ATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACA
genomic: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactgtgct ... tgtgtttcagATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACA
EST: gi|208111462|gb|GD909180.1|GD909180
EST:     TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCG                         ATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACAATGGAATG
genomic: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactgtgct ... tgtgtttcagATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACAATGGAATG
EST: gi|151397172|gb|EV267045.1|EV267045
EST:     TGAGAGATATTGAGATACTGTGCCAGACCCCTGAGATAGAACACTCACCG                         ATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACAATGGAATG
genomic: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactgtgct ... tgtgtttcagATTGTTGCGGCAATACAGAAGATATTATATGCTACAGATGACAATGGAATG