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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGTTCGGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGTTAACTGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTAACAGgttagaaagttaatttaattttgttaccccaaaacaatagcctgcatgacaggttataaaaactgttttttgtgttttcttcttattattagttatcttatgatcttacatgcaatttctctctccag

Basic information

species Glycine max
transcript GLYMA11G05190.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05190.2 (Glycine max), 5'ss of exon 5
lower sequence: AT2G22950.1 (Arabidopsis thaliana), 5'ss of exon 5
GGACGTTCGGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGTTAACTGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTAAC----AGgttagaaagttaatttaattttgttaccccaaaacaatagcctgcatgacaggttataaaaactgt-tttttgtgttttcttcttattattagttatcttatgatcttacatgcaatttctctctccag
|||||||| |||||||| || ||||||||||| || ||||||||  |||| || ||||| |||||  | || || || ||| | ||||| ||||| ||    | |||| | |  | |  | ||| ||||       ||   |    |   | |||  |||||    ||   ||| | | ||| ||| |  || | | |||  | |                            
GGACGTTCTGTTTACATTAACATTCAGAAATTTGTGCAGTTTCAACTAACAGTCAATGTTGTTGCCCTTATTGTTAACTTCTCTTCAGCTTGCTTGACTGgtaagttaaagaaattagctgattctgtttttattcaaattttcatttttttacaa-ttatattgtcttcgtttctatctttacttttgtttctaaattaattcacag-------------------------

upper sequence: GLYMA11G05190.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G37640.1 (Arabidopsis thaliana), 5'ss of exon 5
GGACGTTCGGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGTTAACTGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTAACAGgttagaaagttaatttaattttgttaccccaaaacaatagcctgcatgacaggttataaaaactgttttttgtgttttcttcttattattagttatcttatgatcttacatgcaatttctctctccag
|||||||| ||||||||||| || ||||||||||| ||||||||| | || |||||||| |||||| |  | || || ||| | ||||| || ||||| |||  |        |||| |     ||||  ||  ||||  |  |           | || ||   ||||  |  ||   |  ||   |    |  | | || |||||                     
GGACGTTCTGTTTACATAAACATCCAGAAATTCGTTCAGTTTCAGCTTACCGTTAATGTTGTTGCACTGGTTGTTAACTTCTCTTCAGCTTGTTTAACCGgtagg--------tttagtaagaatacc--aattcaatgtctcg-----------aaaagaatcatttt--ggattccttgtttgacacagctcttatgataatcttcag------------------

upper sequence: GLYMA11G05190.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0129g00180.t01 (Vitis vinifera), 5'ss of exon 5
GGACGTTCGGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGTTAACTGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTAACAGgttagaaagtt--aatttaattttgttaccccaaaacaatagcctgcatgacaggttataaaaactgttttttgtgttttcttcttattattagttatcttatgatcttacatgcaatttctctctccag
|||||||| || |||||||||||||| ||||| |||||||| ||  | || ||||| ||||||||||||||||| || ||| | ||||| || || |||||| ||||      |  ||  || |   |   |||   | |  | | | ||    || | | |||||  || || | || ||     ||| ||  |  || | |  | || ||  || ||           
GGACGTTCAGTCTACATAAATATTCAAAAATTTGTACAGTTCCAACTTACGGTTAACGTGGTTGCATTAATAGTCAACTTCTCTTCAGCTTGTTTGACAGgtaagaagaccccatcttgcttcttccatttcaa---agttacttccttgttttgtcaaataaacttcttctt-ttttctccctacattttttttattccttttttttttcaaacacttcag--------

upper sequence: GLYMA11G05190.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0129g00110.t01 (Vitis vinifera), 5'ss of exon 4
GGACGTTCGGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGTTAACTGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTAACAGgttagaaagtt--aatttaattttgttaccccaaaacaatagcctgcatgacaggttataaaaactgttttttgtgttttcttcttattattagttatcttatgatcttacatgcaatttctctctccag
|||||||| || |||||||||||||| ||||| |||||||| ||  | || ||||| ||||||||||||||||| || ||| | ||||| || || |||||| ||||      |  ||  || |   |   |||   | |  | | | ||    || | | |||||  || || | || ||     ||| ||  |  || | |  | || ||  || ||           
GGACGTTCAGTCTACATAAATATTCAAAAATTTGTACAGTTCCAACTTACGGTTAACGTGGTTGCATTAATAGTCAACTTCTCTTCAGCTTGTTTGACAGgtaagaagaccccatcttgcttcttccatttcaa---agttacttccttgttttgtcaaataaacttcttctt-ttttctccctacattttttttattccttttttttttcaaacacttaag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6073022|gb|AW102409.1|AW102409
EST:     ATTTCACATCAGCCTGCTTAACAG                         GAACTGCACCCCTCACAGCTGTTCAACTCTTGTGGGTGAACATGATAATGG
genomic: ATTTCACATCAGCCTGCTTAACAGgttagaaagt ... ctctctccagGAACTGCACCCCTCACAGCTGTTCAACTCTTGTGGGTGAACATGATAATGG
EST: gi|18733946|gb|BM527900.1|BM527900
EST:     -GTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTGACAG                         GAACTGCACCCCTCACAGCTGTTCAACTCTTGTGGGTGAACATGATAATGG
genomic: TGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTAACAGgttagaaagt ... ctctctccagGAACTGCACCCCTCACAGCTGTTCAACTCTTGTGGGTGAACATGATAATGG
EST: gi|17519533|gb|BM188575.1|BM188575
EST:     TGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTAACAG                         GAACTGCACCCCTCACAGCTGTTCAACTCTTGTGGGTGAACATGATAATGG
genomic: TGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTAACAGgttagaaagt ... ctctctccagGAACTGCACCCCTCACAGCTGTTCAACTCTTGTGGGTGAACATGATAATGG
EST: gi|14008637|gb|BG725241.1|BG725241
EST:     CGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTAACAG                         GAACTGCACCCCTCACAGCTGTTCAACTCTTGTGGGTGAACATGATAATGG
genomic: TGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTAACAGgttagaaagt ... ctctctccagGAACTGCACCCCTCACAGCTGTTCAACTCTTGTGGGTGAACATGATAATGG