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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTAAACACATCAAGGTGGATTGAAGAGGTGCGCATTGAGAGAGGCAGTGATGCTATTATTGTTCATGTTGGGAACAAAACTGACCTTGTCAATAAGAGgtaataatggtagaatgatttgcttgcttgaattgtttggcacttgagatgttccatgtttgctttacgttgttgttttcatgtcttgtaaaagtgttcttttaaatttacacaatttcactcatcatgagtctatag

Basic information

species Glycine max
transcript GLYMA11G04340.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G04340.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g31370.1 (Oryza sativa), 5'ss of exon 4
TCCTAAACACATCAAGGTGGATTGAAGAGGTGCGCATTGAGAGAGGCAGTGATGCTATTATTGTTCATGTTGGGAACAAAACTGACCTTGTCAATAAGAGgtaataatggtagaatgatttgcttgcttgaattgtttggcacttgagatgttccatgtttgctttacgttgttgttttcatgtcttgtaaaagtgttcttttaaatttacacaatttcactcatcatgagtctatag
|||||||||| ||||  ||||| || || ||  | | |||||| |||||||||| ||| ||||| |  ||||||||||||||||| |||||  | ||||||| |     ||  ||  |  | |||| ||    | ||| || |||      |  | || ||   | | | | ||| | | |       |||   |  |||||    | |                             
TCCTAAACACTTCAAAATGGATAGAGGAAGTTAGAACTGAGAGGGGCAGTGATGTTATCATTGTGCTGGTTGGGAACAAAACTGATCTTGTTGACAAGAGgtgagtggagttcaaaaaaattcttgttt----tctttagccctttcctgttatcttgcttatctgatgattttgctgtta------ataatgatcctctttaccttctg----------------------------

upper sequence: GLYMA11G04340.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G169694_T01 (Zea mays), 5'ss of exon 4
TCCTAAACACATCAAGGTGGATTGAAGAGGTGCGCATTGAGAGAGGCAGTGATGCTATTATTGTTCATGTTGGGAACAAAACTGACCTTGTCAATAAGAGgtaataatggtagaatgatttgcttgcttgaattgtttggcacttgagatgttccatgtttgctttacgttgttgttttcatgtcttgtaaaagtgttcttttaaatttacacaatttcactcatcatgagtctatag
|| |||| ||||| | |||||| || || || |||| |||||| |||||||||| ||| ||||| | ||||||||||||||||||||||||  | |||||||     |||| | ||  |   |||   ||| || | |  |  ||  |   | |   ||||||  |  |    | |      | |  | || | |    |   |   |   |                          
TCTTAAATACATCTAAGTGGATAGAGGAAGTTCGCACTGAGAGGGGCAGTGATGTTATCATTGTGCTTGTTGGGAACAAAACTGACCTTGTTGACAAGAGgt-----tggtggtatt-tacacttatctgatttctatatc--ttagggcatgcttggtttgcagtctgaaaatttgcctgggccaagcaatact----tcccaggctcgta--------------------------

upper sequence: GLYMA11G04340.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G075719_T01 (Zea mays), 5'ss of exon 4
TCCTAAACACATCAAGGTGGATTGAAGAGGTGCGCATTGAGAGAGGCAGTGATGCTATTATTGTTCATGTTGGGAACAAAACTGACCTTGTCAATAAGAGgtaataatggtagaatgatttgcttgcttgaattgtttggcact-tgagatgttccatgtttgctttacgttgttgttttcatgtcttgtaaaagtgttcttttaaatttacacaatttcactcatcatgagtctatag
|| |||| ||||| | |||||| || || || |||| |||||| |||||||||| ||| ||||| | ||||||||||||||||||||||||  | |||||||     |||| |  |    | ||| | ||| || | | |   | |  | || || |||| |  |||      |||  || |  |  | |        || | | || |                              
TCTTAAATACATCCAAGTGGATAGATGAAGTTCGCACTGAGAGGGGCAGTGATGTTATCATTGTGCTTGTTGGGAACAAAACTGACCTTGTTGACAAGAGgt-----tggtggtgtttgct-ctttcctgatttctgtagttttgttggttgctctatgtatattttgt----ttggctttaaattctttggtctctctcatgtcaagta-----------------------------