Sequence
atgc intronic sequence ATGC exonic sequenceCCAGCATAGCAGAAAATCTAACATATCCTGGCTCGCGCTGGAAAAAGGGGCAACTGCTTGGAAGGGGGACATTTGGGCATGTATATCTTGGTTTTAACAGgtattttgtaattgttattcctagttcatatttatgtatattttctacagttgggtctatgatgatattattcgtattaggatttttttttgtatgcatg...
Basic information
species | Glycine max |
transcript | GLYMA11G02520.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 5
lower sequence: AC209208.3_FGT001 (Zea mays), 5'ss of exon 2
CCAGCATAGCAGAAAATCTAACATATCCTGGCTCGCGCTGGAAAAAGGGGCAACTGCTTGGAAGGGGGACATTTGGGCATGTATATCTTGGTTTTAACAGgtat----tttgtaattgttattcctagttcatatttatgtatattttctacagttgggtctatgatgatattattcgt--attaggatttttttttgtatgcatg
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CTGGTAGAACAGAGAATCCACCGAGTCCTGGTTCACGGTGGAAGAAGGGAAAATTGATTGGCCGTGGGACATTTGGCCATGTATATGCTGGTTTTAACAGgtatgccttttgccattctcatgcatggaaatgtattgtatttatttcagtttgtatgctgattgaagatatgatttgtttatcagagttacagtttctg------
upper sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 3
CCAGCATAGCAGAAAATCTAACATATCCTGGCTCGCGCTGGAAAAAGGGGCAACTGCTTGGAAGGGGGACATTTGGGCATGTATATCTTGGTTTTAACAGgtat----tttgtaattgttattcctagttcatatttatgtatattttctacagttgggtctatgatgatattattcgtattaggatttttttttgtatgcatg
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CTGGTAGAACAGAGAATCCACCGAGTCCTGGTTCACGGTGGAAGAAGGGAAAACTGATTGGCCGTGGGACATTTGGCCATGTATATGCTGGTTTTAACAGgtatgccttttgccattttcatgcatggaaatggattatattcacttcagtttgtatgctgattgaagagacggtt--ttttgcaaatttacttgggctgtt--
upper sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g03850.t01 (Vitis vinifera), 5'ss of exon 1
CCAGCATAGCAGAAAATCTAACATATCCTGGCTCGCGCTGGAAAAAGGGGCAACTGCTTGGAAGGGGGACATTTGGGCATGTATATCTTGGTTTTAACAGgtattttgtaattgttattcctagttcatatttatgtatattt-tctacagttgggtctatgatgatattattc-gtattaggatttttttttgtatgcatg----
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CTGGTAGGGCGGAAAACCCAATTAGCCCTGGATTACGCTGGAAGAAGGGTTGGCTCTTAGGGAGAGGCGCATTTGGGCATGTATATCTTGGGTTTAATAGgt---ttgtgac---caaatggggtgtatgcccacgtaactttatttttagagaagggtattgttgttttattttataactgatttgatctttgcatgtaagacat
upper sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 4
CCAGCATAGCAGAAAATCTAACATATCCTGGCTCGCGCTGGAAAAAGGGGCAACTGCTTGGAAGGGGGACATTTGGGCATGTATATCTTGGTTTTAACAGgtattttgtaattgttattcctagttcatatttatgtatattt-tctacagttgggtctatgatgatattattc-gtattaggatttttttttgtatgcatg----
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CTGGTAGGGCGGAAAACCCAATCAGCCCTGGATCACGCTGGAAGAAGGGTCGGCTCTTAGGGAGAGGCACATTTGGGCATGTATATCTTGGGTTTAATAGgt---ttgtgac---caaatggggtgtatgcccacgtaactttatttttagagaagggtattgttgttttattttataactgatttgatctttgcatgtaagacatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13478024|gb|BG507669.1|BG507669EST: CAACTGCTTGGAAGGGGGACATTTGGGCATGTATATCTTGGTTTTAACAG TGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACTCTTTTTTCAGATGA
genomic: CAACTGCTTGGAAGGGGGACATTTGGGCATGTATATCTTGGTTTTAACAGgtattttgta ... tgatccatagTGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACTCTTTTTTCAGATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCAGCATAGCAGAAAATCTAACATATCCTGGCTCGCGCTGGAAAAAGGGGCAACTGCTTGGAAGGGGGACATTTGGGCATGTATATCTTGGTTTTAACAGgtattttgtaattgttattcctagttcatatttatgtatattttctacagttgggtctatgatgatattattcgtattaggatttttttttgtatgcatg
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