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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGGTTGCAGGGATTTTATTTAATCAATGGCCAACATTATGATTCGTTCTTATTCTTGTACTATGTAAATGGGGGACGGTCTCCTTGCTCACCATTgtaagtacaaaatacctttcaatttttatcccttgatttgttcagactggtcttacatgtattgctttaaattatcctgttatggatagtgtagaagttt...

Basic information

species Glycine max
transcript GLYMA11G01170.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G01170.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g46700.1 (Oryza sativa), 5'ss of exon 4
TGAGAAGGTTGCAGGGATTTTATTTAATCAATGGCCAACATTATGATTCGTTCTTATTCTTGTACTATGTAAATGGGGGACGGTCTCCTTGCTCACCATTgtaagtacaaaatacctttcaatttttatcccttga----tttgttcagactggtcttac-atgtattgctttaa-attatcctgttatggatagt-gtagaagttt
| ||| |  | |     || ||||  || |  || || ||||||||||| | ||| ||  |||||||||| |||||||| || || |||||||||||| ||||||||     |    || |  |       | ||     ||||||   | | ||  | | |||   || || || |  ||  |  |||    ||| ||        
TCAGACGACTTCCACATTTCTATTACATAAGAGGGCAGCATTATGATTCATACTTGTTTGTGTACTATGTCAATGGGGGCCGTTCGCCTTGCTCACCACTgtaagtatttcttgttctttatctggagaagcatgcaagttttgtttttagtagttatccgatgctgtgtttcaataggattttactatctgcagttgtc-------

upper sequence: GLYMA11G01170.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0039g01810.t01 (Vitis vinifera), 5'ss of exon 9
TGAGAAGGTTGCAGGGATTTTATTTAATCAATGGCCAACATTATGATTCGTTCTTATTCTTGTACTATGTAAATGGGGGACGGTCTCCTTGCTCACCATTgtaagtacaaaa-tacctttcaatttttatcccttgatttgttcagactggtcttacatgtattgctttaaattatcctgttatggatagtgtagaagttt
|| ||||| |||| |  ||||| || |||||||| || ||||||||||| | ||||||| | |||||||||||||| || || ||||| |||||||||||||||||||||||  | | ||    ||   |        || |      |||| |       | |  |||    | |  | |||  |  |   || ||    
TGCGAAGGCTGCATGATTTTTACTTCATCAATGGTCAGCATTATGATTCATACTTATTCGTTTACTATGTAAATGGCGGTCGATCTCCATGCTCACCATTgtaagtacaaaaacatccttttccttgagtttacacggttatatcctgtggtttggtggagaatagtttctgctctgttattaatgtgaaaataaaacaa-