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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATGGTCAACTGTGTTTTGCGGTATTGTCTCGAGAGCGTTGACCCTTGAAGTCCTTTCAACTGGAGTAGCAGGAAACTACAACGGAGCCTTGCAAGTGgtacgcatttttctccccttttatatattttcttctacaccatgacccggtgttgttgacagataactttaccctcgaccaggacaaaaaatatatctttgttagcacctcttaattaacaaagtgttttttgcttttttgtgtttag

Basic information

species Glycine max
transcript GLYMA11G00570.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G00570.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0116g00680.t01 (Vitis vinifera), 5'ss of exon 5
CCAATGGTCAACTGTGTTTTGCGGTATTGTCTCGAGAGCGTTGACCCTTGAAGTCCTTTCAACTGGAGTAGCAGGAAACTACAACGGAGCCTTGCAAGTGgtacgcatttttctccccttttatatattttcttctacaccatgacccggtgttgttgacagataactttaccctcgaccaggacaaaaaatatatctttgttagcacctcttaattaacaaagtgttttttgcttttttgtgtttag
 |||||||||| |||||||| ||||||||| || |||||  ||||||| |||||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||                | ||  || |  |||    || | ||    |||| |  ||| | || || |   || |     |  ||||   |   | | |  |||                                         
TCAATGGTCAAGTGTGTTTTCCGGTATTGTTTCAAGAGCAATGACCCTAGAAGTCCTCTCAACGGGAGTCGCAGGGAACTACAATGGAGCCTTGCAAGTGgtac----------------tgatcaatgtctttc----ccctaactttatgttttgaacaaaaaatttcaatttccatatccatgaaaa-cgttcttatttctgcag----------------------------------------