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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTCCTTTGTCTATCGATCACAAACCTGATAGATCTGATGAACGTCGAAGGATTGAACAGGCTGGGGGATTCATAATTTGGGCTGgtaattttcttcctgtataggtgtatgccattttttttggagttcatacttcataataaattttgagggcgagccctggtgcagcggtaaagttgtgcct...

Basic information

species Glycine max
transcript GLYMA10G43810.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43810.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g15050.t01 (Vitis vinifera), 5'ss of exon 5
CTATTCCTTTGTCTATCGATCACAAACCTGATAGATCTGATGAACGTCGAAGGATTGAACAGGCTGGGGGATTCATAATTTGGGCTGgtaattttcttcctgtataggtgtatgccattttttttggagttcatacttcataataaattttgagggcgagccctggtgcagcggtaaagtt-----gtgcct---
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CTATCCCACTGTCCACTGATCACAAACCTGATAGATCTGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGgtaagtttcaatctttgcagtcttat----ttatatgcacagaccatgcct-atgcctaactgt---ggtgtatgttcatgcattgggaaggttctcaggtggttgtc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315402|gb|FK009204.1|FK009204
EST:     TGATGAACGTCGAAGGATTGAACAGGCTGGGGGATTCATAATTTGGGCTG                         GAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCGTTTGGAGACA
genomic: TGATGAACGTCGAAGGATTGAACAGGCTGGGGGATTCATAATTTGGGCTGgtaattttct ... gttgatccagGAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCGTTTGGAGACA
EST: gi|208189453|gb|GD987693.1|GD987693
EST:     GGCTGGGGGATTCATAATTTGGGCTG                         GAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCGTTTGGAGACA
genomic: GGCTGGGGGATTCATAATTTGGGCTGgtaattttct ... gttgatccagGAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCGTTTGGAGACA