Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGACCTAGTTGGTGAATCAGACATTGCTTCTTTGGTCCAGCGGATAAGGgttggtgtctttctcttcctattctatctaagagtttaatttttatttcattattttgagctccatatgaacctggcagtgttttaattcag

Basic information

species Glycine max
transcript GLYMA10G43740.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43740.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g08260.t01 (Vitis vinifera), 5'ss of exon 5
ACTGACCTAGTTGGTGAATCAGACATTGCTTCTTTGGTCCAGCGGATAAGGgttggtgtctttct-cttcctattctatctaagagtttaatttttatttcattattt-tgagctccatatgaacctggcagtgtt--ttaattcag
| ||| || ||||||||  |||| |||||||| |||||||||||||||| |||||||  ||| || ||| ||    |  ||   | |||  || || |||| || |   || | |  |        ||| | | ||  | ||  |||
ATTGATCTTGTTGGTGAGCCAGAAATTGCTTCATTGGTCCAGCGGATAAAGgttggtaccttgcttcttgcttggatggctttcatttttcttattgtttcgttttggatgtgttggactgtggtgtggtacttttgctgaaagcag