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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGGACTTTTCCATTTCCCGAGCATCAGTTGATTGGGGCATTCCTGTTCCCGATGACAAGACCCAGACTATATATGTATGGTTTGATGCTTTACTAGGgtaaggaatgcattttatggcttgtgcgtgcttctctaatttcccttgactctattctataatcttatagttcctgtctatcataatcaatgactatcag...

Basic information

species Glycine max
transcript GLYMA10G43550.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43550.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G55400.2 (Arabidopsis thaliana), 5'ss of exon 4
TGAGGGACTTTTCCATTTCCCGAGCATCAGTTGATTGGGGCATTCCTGTTCCCGATGACAAGACCCAGACTATATATGTATGGTTTGATGCTTTACTAGGgtaaggaatgcattttatggcttgtgcgtgct-tctctaatttcc-cttgactctattctataatcttata-gttcctg-tctatcataatcaatgactatcag------------------------------------------------------------------------
| || || ||||||||||| ||||||| ||| |||||||| |||||||||||||| ||| | |  || || |||||||| |||||||||||| |||| |||||   | |   |||| |  ||     |   | | | |  || |  ||| | ||| |  |||      | |  ||  || | | ||||||   ||| || |                                                                           
TAAGAGATTTTTCCATTTCTCGAGCATTAGTGGATTGGGGAATTCCTGTTCCCGACGACGATAAGCAAACCATATATGTTTGGTTTGATGCTCTACTTGGgtatata-tcttttttctttctatcaagaattatatgtggttactgcttaagtctttgttatgtctccacacattgatgatatgtcataacttatgtctgttcatataaagaaaggttgtttctcttagttgcgagattaaacattgaagttaatatttgccgtttctcattgcag

upper sequence: GLYMA10G43550.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 5
TGAGGGACTTTTCCATTTCCCGAGCATCAGTTGATTGGGGCATTCCTGTTCCCGATGACAAGACCCAGACTATATATGTATGGTTTGATGCTTTACTAGGgtaaggaatgcattttatggcttgtgcgtgcttctctaatttcccttgactctattctataatcttatagttcctgtctatcataatcaatgactatcag
||||||| ||||| |||||||||||||| || ||||||||||||||||||||  ||||||| |  ||||| ||||| || ||||||||||||||||| |||||| |  |    ||||   |       |  |    |         |||   |  || || | | || | ||  ||  |    |  |   |  |  |   
TGAGGGATTTTTCTATTTCCCGAGCATCTGTGGATTGGGGCATTCCTGTTCCTAATGACAACAAGCAGACCATATACGTCTGGTTTGATGCTTTACTGGGgtaaagtttttcctttagttcggaattattttatgttgcaagtttgtgagcattatcaattaacataaacttggtgcttcatttccttgctttccttgct