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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACACTGGGCGCAAAGTTGAAGATCCTGATATGTTAGAGAGAATTCGACTTACCATTATTAACAATCTGTTGAAATATCATCCTgtaagtttgtttcatagataattgcctctggatttcttatatggttactttatagataagaagcttccttgtaattaacattttttctaaacacaacttttccttgttactttttgccaacatactttttagtttgctcttgattttcagtttttctttactcataaatattatataatttgtgtag

Basic information

species Glycine max
transcript GLYMA10G42580.4
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42580.4 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0147g00220.t01 (Vitis vinifera), 5'ss of exon 5
AGACACTGGGCGCAAAGTTGAAGATCCTGATATGTTAGAGAGAATTCGACTTACCATTATTAACAATCTGTTGAAATATCATCCTgtaagtttgtttcatagataattgcctc-tggatttcttatatggttactttatagataagaagcttccttgtaattaacattttttctaaacacaacttttccttgttactttttgccaacatactttttagt-ttgctcttgattttcagtttttctttactcataaatattatataatttgtgtag
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---TGATGGACGCAAAGTTGAAGATCCTGACATGTTAGAGAGAATTCGACTTACAATCATCAACAACCTTTTGAAGTATCATCCAgtatgtatttgagttgaacactaatttcactgatgttttattt--ttatttt--------tagtcttactggtggatgaaat---------ggaagaatcttcaccctcactttcttt--acatctctttcactgttgcatttcttttttaagtatccctttttggcatcctttctag-----------