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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCACAGAAGGAGTACTTTCCTCTTGTAGTTTGGAGTTACAACATATTGTTTCTTCTCTGTAATCGGATTTATGAAGGATATTCATTCTCTATATTTGGgtgagatgcataaggtttgttgtattgttatattttatgctaggagtaattctatttccacttaagattatgtatttacattgcag

Basic information

species Glycine max
transcript GLYMA10G41940.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41940.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 5
TTGCACAGAAGGAGTACTTTCCTCTTGTAGTTTGGAGTTACAACATATTGTTTCTTCTCTGTAATCGGATTTATGAAGGATATTCATTCTCTATATTTGGgtgagatgcataaggtttgttgtattgttatattttatgctaggagtaattctatttccact-taagattatgtatttacattgcag---------------
|||||| ||     |||||||||    |  | |||| || ||||||||| |||||  |||| ||||| ||||||||||||||||| ||||| || || ||||||| |   |||   |       |||  | |    || || |||||  || |||     || | |   |    | ||  ||                    
TTGCACGGACTAGTTACTTTCCTTACATGCTGTGGACTTTCAACATATTTTTTCTCTTCTGCAATCGCATTTATGAAGGATATTCTTTCTCCATTTTCGGgtgagttatgtaaatctcacat--ttgacacac---atacttggagttgttgtatggttgctgtgaagcttaacactttgataatttctctctttgtccaag

upper sequence: GLYMA10G41940.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0559g00010.t01 (Vitis vinifera), 5'ss of exon 8
TTGCACAGAAGGAGTACTTTCCTCTTGTAGTTTGGAGTTACAACATATTGTTTCTTCTCTGTAATCGGATTTATGAAGGATATTCATTCTCTATATTTGGgtgagatgcataaggtttgttgtattgttatattttatgctaggagtaattctat-ttccacttaagattatgtatttac-attgcag-----------------
||||||  |   |||||||  |    | | |||||| || |||| |||| |||||| | | |||||| ||| ||||||||||||||||||| |  |||||||||| |   |||| |  | | ||      ||||   ||||  ||||| |   || ||| ||  | |  ||   | |||  |||| |                  
TTGCACGAACAAAGTACTTCTCATCAGCACTTTGGACTTTCAACTTATTTTTTCTTATATATAATCGTATTCATGAAGGATATTCATTCTCCACTTTTGGgtgagctctctaagctaggatataaat---tattggttgctttgagtagtcagatgttcaacccatgcctactcacttatgattgtaaatgcttattttgcatag

upper sequence: GLYMA10G41940.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0507g00010.t01 (Vitis vinifera), 5'ss of exon 5
TTGCACAGAAGGAGTACTTTCCTCTTGTAGTTTGGAGTTACAACATATTGTTTCTTCTCTGTAATCGGATTTATGAAGGATATTCATTCTCTATATTTGGgtgagatgcataaggtttgttgtattgttatattttatgctaggagtaattctatttcca--cttaagattatgtatttac-attgcag-----------------
||||||  |   |||||||  |    ||| |||||| || |||| |||| |||||| | | |||||| ||| ||||||||||||||||||| |  |||||||||| |   |||| |  | | ||   |  |  ||   |||  ||||| |   || | ||  |  | |  ||  || |||  |||| |                  
TTGCACGAACAAAGTACTTCTCATCAGTACTTTGGACTTTCAACTTATTTTTTCTTATGTATAATCGTATTCATGAAGGATATTCATTCTCCACTTTTGGgtgagctctctaagctaggatataaattcttggtt---gctttgagtagtcagatgttcaaccccatgcctacttacttatgattgtaattgcttattttgcatag