1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATCGTTAGCTGAACTGCCTGGAGATAGTGGGCAAATTGTTCTTGCAATGGGAGGATTGGATAACAAGATTCACCTTTATTGCGGTGGAAGGACCAGAAAGgtatcttcatcccctaagttgtagattattaacttgaacttttggtttcttgtagttttatctgtcggctggtgtttaagttattttacttttcttttacatatgaacccag
species | Glycine max |
transcript | GLYMA10G41620.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGGATTGGATAACAAGATTCACCTTTATTGCGGTGGAAGGACCAGAAAG CTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTEST: gi|193717940|gb|FK653772.1|FK653772
genomic: GAGGATTGGATAACAAGATTCACCTTTATTGCGGTGGAAGGACCAGAAAGgtatcttcat ... atgaacccagCTTGTACATGCATGTGAGCTAAAAGGGCATACAGATT
EST: GAGGATTGGATAACAAGATTCACCTTTATTGCGGTGGAAGGACCGGAAAG CTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTGEST: gi|208071109|gb|GD868412.1|GD868412
genomic: GAGGATTGGATAACAAGATTCACCTTTATTGCGGTGGAAGGACCAGAAAGgtatcttcat ... atgaacccagCTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTG
EST: TGGAAGGACCAGAAAG CTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTGEST: gi|193619547|gb|FK572591.1|FK572591
genomic: TGGAAGGACCAGAAAGgtatcttcat ... atgaacccagCTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTG
EST: GAGGATTGGATAACAAGATTCACCTTTATTGCGGTGGAAGGACCAGAAAG CTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTG
genomic: GAGGATTGGATAACAAGATTCACCTTTATTGCGGTGGAAGGACCAGAAAGgtatcttcat ... atgaacccagCTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGTTAGCTGAACTGCCTGGAGATAGTGGGCAAATTGTTCTTGCAATGGGAGGATTGGATAACAAGATTCACCTTTATTGCGGTGGAAGGACCAGAAAGgtatcttcatcccctaagttgtagattattaacttgaacttttggtttcttgtagttttatctgtcggctggtgtttaagttattttacttttcttttacatatgaacccag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG