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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGCAACATCCATATGTACCTCTTACATCTGTTCTTAACAAGTTGGGTCTATCAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGGTCAGTGAAGGgtgaagttttcttatttgtcaatcttgtactttatggtttcagtagcaatgtttgtttatacaattataccattcattttgaggacaaaactagttggct...

Basic information

species Glycine max
transcript GLYMA10G39550.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39550.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g03060.t01 (Vitis vinifera), 5'ss of exon 5
ATGTGCAACATCCATATGTACCTCTTACATCTGTTCTTAACAAGTTGGGTCTATCAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGGTCAGTGAAGGgtgaagttttcttatttgtcaatcttgtactttatg-gtttcagtagcaatgtttgtttatacaattataccattcattttgaggacaaaactagttggct-----
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CTGTGGAGCATCCATATGTTCCTCTTACATCTGTTCTTAACAAATTAGGTCTTTCACAAACTGTTTTGGTGAATTTGGCATTACACTTGGTCAGTGAAGGgt-aagtatgct-----gctatccttattctcaatgtgttcttttagtggattctgagattgcagatgcattgttttctgtatcagtgatttcaatagggttagtg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933379|gb|BU550518.1|BU550518
EST:     CTATCAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGGTCAGTGAAGG                         GCTTCGGAGTTCTCTGTGGCTTCAATTTAAACCCCATCATATTGCTGCTGG
genomic: CTATCAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGGTCAGTGAAGGgtgaagtttt ... tgttttgcagGCTTCGGAGTTCTCTGTGGCTTCAATTTAAACCCCATCATATTGCTGCTGG