Sequence
atgc intronic sequence ATGC exonic sequenceGTACAAATGGATAACATATGGAGAAGCAGGTACGGCCCGGTCAGCAATAGGTTCTGGTTTGATTTATCATGGAATCGAAAAGgtgaatgctagattgtagtttcatggttgattattattttattttttacaaagtatcatgtaaccattggtttacatgctcatttttag
Basic information
species | Glycine max |
transcript | GLYMA10G39540.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g04990.1 (Oryza sativa), 5'ss of exon 5
GTACAAATGGATAACATATGGAGAAGCAGGTACGGCCCGGTCAGCAATAGGTTCTGGTTTGATTTATCATGGAATCGAAAAGgtgaatgctagattgtagtttcatggttgattattattttattttttacaaagtatcatgtaaccattggtttacatgctcatttttag-------------------------------------------------------------------------
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CTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAAgtgagtc----attatgatctcaacaagcaccgtccttctgattttaactac-taacaggcagatcttgtcacacattgccataatgatatagcatttgtggttacacttacagattcctttttttaaacttgcattaaataattttctaaaactgaaccag
upper sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 5
GTACAAATGGATAACATATGGAGAAGCAGGTACGGCCCGGTCAGCAATAGGTTCTGGTTTGATTTATCATGGAATCGAAAAGgtgaatg--ctagattgtagtttcatggttgattattattttattttttacaaagtatc-----atgtaaccattggtttacatgctcatttttag-----------------------------------------------------------------------------------------------------
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GTACAAATGGATGACATATGGAGAAGCAGGTACTGCTCGATCAGCAATTGGTTCTGGTTTAATATACTATGGAATACCGAAAgtgagttgtccaaattctaaatt-aagtttgaacattgtcatgcactcttaattttgttcttggattggacttatgtttttctaaaatgttttgtgaaaacatctactcaagattttcaaatccattctttcttaacatttggttatccattgattttcctttttttttttttaaattttctttaatgctgtaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213605762|gb|DB968594.1|DB968594EST: CGGCCCGGTCAGCAATAGGTTCTGGTTTGATTTATCATGGAATCGAAAAG GGCTCCAGTATTGCGTTGTATTTTATTAACAGACCTGAGTGGCTCATTGT
genomic: CGGCCCGGTCAGCAATAGGTTCTGGTTTGATTTATCATGGAATCGAAAAGgtgaatgcta ... tcatttttagGGCTCCAGTATTGGGTTGTATTTTATTAACAGACCTGAGTGGCTCATTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GTACAAATGGATAACATATGGAGAAGCAGGTACGGCCCGGTCAGCAATAGGTTCTGGTTTGATTTATCATGGAATCGAAAAGgtgaatgctagattgtagtttcatggttgattattattttattttttacaaagtatcatgtaaccattggtttacatgctcatttttag
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