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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtatgttgtttaattacttcattaaactttggaattttgctattgagcctctgatgtttccaaatactctttttaatgtgaatcatctatcatgcttcttgttccttttgtctttccctttattcttattattactaatgaaccctctggatatcctcatttatag

Basic information

species Glycine max
transcript GLYMA10G39370.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39370.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G22425.2 (Arabidopsis thaliana), 5'ss of exon 5
GATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGgtagtgtatgttgtttaattacttcattaaactttggaattttgctattgagcctctgatgtttccaaatactctttttaatgtgaatcatctatcatgcttcttgttccttttgtctttccctttattcttattattactaatgaaccctctggatatcctcatttatag
|| |||||||| |||||| ||||  |||| || ||||| ||||| |||||||| ||||| |||||||||||||||||  | | | |  |      | |   ||   |||| |  |||  || |      |  | |||||   | || || ||  ||       ||   ||  |    | | |||  |||||                                                       
GACTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTCAGgttctctctttgctcctggaattgtctt---cttttgggtttatctgt--gttattcgttgttt---agtaatcattgaaagtgttgccaaaaattgtttaacct-ttcgatttgtag-----------------------------------------------------