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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACTTGGGATTGGAATAGTGGCATATAGCCCTCTTGGTCATGGCTTTTTCGCAGGGAAGGCAGCGGTAGAGACTTTGCCTAGTCAGAGCGCACTGgtatgtagctagtgactagtaaaccaatttcaggtttgcatgaatttgtagccttttcctataacttgtcaaaataaaattgactggttcaaatttcaaaccatttgtaggatcatatgattgtgttggataggactaatctattcctgcagggattgtctattgaattttgatgtttctgatacag

Basic information

species Glycine max
transcript GLYMA10G38890.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38890.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g04130.t01 (Vitis vinifera), 5'ss of exon 5
GGAACTTGGGATTGGAATAGTGGCATATAGCCCTCTTGGTCATGGCTTTTTCGCAGGGAAGGCAGCGGTAGAGACTTTGCCTAGTCAGAGCGCACTGgtatgtagctagtgac-------tagtaaaccaatttcaggtttgcatgaatttgtagccttttcctataacttgtcaaaataaaattgactggttcaaatttcaaaccatttgtaggatcatatgattgtgttggataggactaatctattcctgcagggattgtctattgaattttgatgtttctgatacag
 || ||||| ||||||||||| ||||||||||||||||||| ||| || || |  ||||||||||  || ||||  ||||| | ||||||    |||||  ||| |||  ||        ||||||    | |  |||||    |   | ||     ||||  ||   ||| | |     |||     | | |||  |||  | | |||    | ||||     || | |    |   ||| |   ||||||||                                     
AGAGCTTGGTATTGGAATAGTAGCATATAGCCCTCTTGGTCGTGGATTCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTGgtcagtaactatagataaaaatttagtaatttgaatataggttcttctccgtctgag--ttttttttacttcttttgatgggcaaagaacatcgatcatttttttagc-att---ggaatca----gttatttaaattcatactgac--attcctgccacag--------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323154|gb|FK017035.1|FK017035
EST:     TTTTCGCAGGGAAAGCAGCGGTAGAGACTTTGCCTAGTCAGAGCGCACTG                         GCTGAAGATGCCAGGTTCAGTGGAGAAAATTTGGAAAAGAACAAGCTTTTC
genomic: TTTTCGCAGGGAAGGCAGCGGTAGAGACTTTGCCTAGTCAGAGCGCACTGgtatgtagct ... tctgatacagGCTGAAGATGCCAGGTTCAGTGGAGAAAATTTGGAAAAGAACAAGCTTTTC
EST: gi|7232344|gb|AW567701.1|AW567701
EST:     TTTTCGCAGGGAAGGCAGCGGTAGAGACTTTGCCTAGTCAGAGCGCACTG                         GCTGAAGATGCCAGGTTCAGTGGAGAAAATTTGGAAAAGAACAAGCTTTTC
genomic: TTTTCGCAGGGAAGGCAGCGGTAGAGACTTTGCCTAGTCAGAGCGCACTGgtatgtagct ... tctgatacagGCTGAAGATGCCAGGTTCAGTGGAGAAAATTTGGAAAAGAACAAGCTTTTC
EST: gi|22525129|gb|BU083940.1|BU083940
EST:     TTTTCGCAGGGAAGGCAGCGGTAGAGACTTTGCCTAGTCAGAGCGCACTG                         GCTGAAGATGCCAGGTTCAGTGGAGAAAATTTGGAAAAGAACAAGCTTTTC
genomic: TTTTCGCAGGGAAGGCAGCGGTAGAGACTTTGCCTAGTCAGAGCGCACTGgtatgtagct ... tctgatacagGCTGAAGATGCCAGGTTCAGTGGAGAAAATTTGGAAAAGAACAAGCTTTTC