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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATATTGTCTAGTGCTTTTGACTCAAGCCTTTATACTTGTATGCATCTATTAAACTCCGCTGAAACTCTTGTAGTTGGAACTGGAAATGGTTCTCTGAGgtgaaattaattctctgttttgaatgccatttcaatcagatatataaaaaatatctcgatgcctgccaacatttgaatctttgttgtactgtacag

Basic information

species Glycine max
transcript GLYMA10G38860.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38860.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g00030.t01 (Vitis vinifera), 5'ss of exon 12
GAATATTGTCTAGTGCTTTTGACTCAAGCCTTTATACTTGTATGCATCTATTAAACTCCGCTGAAACTCTTGTAGTTGGAACTGGAAATGGTTCTCTGAGgtgaaattaattctctgttttgaatgccatttcaatcagatatataaaaaatatctcgatgcctgccaacatt-tgaatctttgttgtactgtacag
| ||| || ||||||| |||||   |||| | || |||||||||||||| ||  | || | |||||  |||||||||||||| |||||||||||||| |||| ||||| ||| |   ||       |||  | |   ||||| | || |  ||| | |||||     ||  || | ||| ||  || |||| | |||
GGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGgt-aaattgatttttcattc------ccagctgatgtagatagaaaatatctatttagatgcacttgaattttctaaattttcattatactatgcag

upper sequence: GLYMA10G38860.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g00560.t01 (Vitis vinifera), 5'ss of exon 12
GAATATTGTCTAGTGCTTTTGACTCAAGCCTTTATACTTGTATGCATCTATTAAACTCCGCTGAAACTCTTGTAGTTGGAACTGGAAATGGTTCTCTGAGgtgaaattaattctctgttttgaatgccatttcaatcagatatataaaaaatatctcgatgcctgccaacatt-tgaatctttgttgtactgtacag
| ||| || ||||||| |||||   |||| | || |||||||||||||| ||  | || | |||||  |||||||||||||| |||||||||||||| |||| ||||| ||| |   ||       |||  | |   ||| | | || |  ||| | |||||     ||  || | ||| ||  || |||| | |||
GGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGgt-aaattgatttttcattc------ccagctgatgtagacagaaaatatctatttagatgcacttgaattttctaaattttcattatactatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338005|gb|CO981871.1|CO981871
EST:     TTAAACTCCGCTGAAACTCTTGTAGTTGGAACTGGAAATGGTTNNCTGAG                         GTTCTTTGATGTTGCTCGAGGTCAAAAGCTTCATATCTGGAGAGGCGAATC
genomic: TTAAACTCCGCTGAAACTCTTGTAGTTGGAACTGGAAATGGTTCTCTGAGgtgaaattaa ... tactgtacagGTTCTTTGATGTTGCTCGAGGTCAAAAGCTTCATATCTGGAGAGGCGAATC