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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATTAGAACACCGCAACGGCTTGGAGAGGGATTAGAATCATGGTGTGGATTTTACCAGAGTATAAGGCCTACACAAATGGGCCTTTCCCTTAATATTGgtatatcatttatatttatattgattatataagtagtccaatgaaagtacaaaggaagccttgtttacttttagaaattgttttttgttttcaaatattt...

Basic information

species Glycine max
transcript GLYMA10G38770.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G43810.1 (Arabidopsis thaliana), 5'ss of exon 4
GATATTAGAACACCGCAACGGCTTGGAGAGGGATTAGAATCATGGTGTGGATTTTACCAGAGTATAAGGCCTACACAAATGGGCCTTTCCCTTAATATTGgtatatcatttatatttatattgattatataagtagtccaatgaaagtacaaaggaagccttgtttacttttagaaattgttttttgttttcaaatattt
||||||| ||||||||| || || || || || ||||| ||||||||||| |||||||||||||| || || || ||||||||  | || || ||||| |||| |  ||||   || | |  |||| |   |||  |    | |   || ||   |  ||    ||| | |||    || |  ||  |||  |       
GATATTAAAACACCGCAGCGACTCGGTGAAGGGTTAGAGTCATGGTGTGGGTTTTACCAGAGTATTAGACCAACTCAAATGGGTTTATCACTAAATATCGgtaaag-atttgacttaaga--gattgttacagttttggttttattttataagtcagcccaatcttaatgtta----ttctccttactttgtag------

upper sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 4
GATATTAGAACACCGCAACGGCTTGGAGAGGGATTAGAATCATGGTGTGGATTTTACCAGAGTATAAGGCCTACACAAATGGGCCTTTCCCTTAATATTGgtatatcatttatatttatattgattatataagta---gtccaatgaaagtacaaaggaagccttgtttacttttagaaatt-gttttttgttttcaaatattt--
||||||||| |||| ||||| |||||||| || || || |||||||||||||| |||||||||||||| ||||| || |||||  | || || |||||||||| || |   ||   ||    | |  | ||| ||   || |  | |  ||    |   |   |   || || |||        |  | | ||||    |  ||  
GATATTAGAGCACCTCAACGTCTTGGAGAAGGTTTGGAGTCATGGTGTGGATTCTACCAGAGTATAAGACCTACTCAGATGGGTTTGTCACTGAATATTGgtaaataaaagatggataagaagttcctgtaaatattagttcttttactgttttca---attttaaattgctcttattttcccatcctctatttttgccttgttag

upper sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ19862 (Selaginella moellendorffii), 5'ss of exon 4
GATATTAGAACACCG-CAACGGCTTGGAGAGGGATTAGAATCATGGTGTGGATTTTACCAGAGTATAAGGCCTACACAAATGGGCCTTTCCCTTAATATTGgtatatcatttatatttatattgattatataagtagtccaatgaaagtacaaaggaagccttgtttacttttagaaattgttttttgttttcaaatattt
||  |||| ||   | ||||  || || || || ||||||   ||| | || || ||||||||||||||||| || |||||||| ||||| || |||||||||| |  ||   |||  |   ||||  |||  ||  ||  ||  |      |||                                              
GAC-TTAGGACGTAGACAACCCCTCGGTGACGGCTTAGAAAGCTGGCGAGGGTTCTACCAGAGTATAAGGCCCACGCAAATGGGTCTTTCTCTGAATATTGgta-aggat---tatgaaatgtgatggtatgtgt--tctgatctattgttgaag----------------------------------------------

upper sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ19863 (Selaginella moellendorffii), 5'ss of exon 4
GATATTAGAACAC-CGCAACGGCTTGGAGAGGGATTAGAATCATGGTGTGGATTTTACCAGAGTATAAGGCCTACACAAATGGGCCTTTCCCTTAATATTGgtat--atcatttatatttatattgattatataagtagtccaatgaaagtacaaaggaagccttgtttacttttagaaattgttttttgttttcaaatattt
||  |||| ||   | |||   || || || || ||||||   ||| | || || ||||||||||||||||| || |||||||| ||||| || ||||||||||   || ||  |   | ||  |     |     |  |    ||||                                                       
GAC-TTAGGACGTACACAATCCCTCGGTGACGGCTTAGAAAGCTGGCGAGGGTTCTACCAGAGTATAAGGCCCACGCAAATGGGTCTTTCTCTGAATATTGgtaaggattatgaaatgtgatggtatgcgttctgatcttttgttgaag------------------------------------------------------