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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCGCAATGCAATGGCGCATCCAACCAATAAGgtaaattgcagtatctttttgctcctgtctgaagtaacggccttatctatttcttttataatagattctcctttaatatcaaatttacttgtaattgtat...

Basic information

species Glycine max
transcript GLYMA10G38750.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38750.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G139683_T03 (Zea mays), 5'ss of exon 4
GTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCGCAATGCAATGGCGCATCCAACCAATAAGgtaa---attgcagtatctttttgc-tcctgtctgaagtaacggcctta---tctatttcttttataatag-attctcctttaatatcaaatttacttgtaattgtat
|||||| || ||||| |  ||||||||||| || || ||||| ||||| || ||||||||||| |||||||| || ||||| |    |||   ||   |    | | |   ||  || | ||   |||   | | |||    | |   ||  |  ||| ||  |   |||  ||  ||         
GTATCCACACTGCCTTTTCTTTCTTGAGCTTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatcttttggcctagaatcacacgttcacacttgagcaccgtttttagcttttgtttaccgtcttgcagtgtcatcccttctttcaaaacctagctga--------

upper sequence: GLYMA10G38750.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0039g02760.t01 (Vitis vinifera), 5'ss of exon 5
GTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCGCAATGCAATGGCGCATCCAACCAATAAGgtaaattgcagtatctttttgctcctgtctgaagtaacggccttatctatttcttttataatagattctcctttaatatcaaatttacttgtaattgtat-----
|||||| |||||||| | ||||||||| || |||||||||||||| || |||||||||||||| |||||    |  |||||   || |       | |||    |    | |  || |   | |   | |   || ||  | |||  |  || ||| |      |   ||   ||  ||     
GTATCCACATTGCCTTTTTTTTCTTGAACTTCTTCAGAATGCAAACTTCCGCAATGCAATGGCTCATCCTGGAAGCAAGgtttgtttctagcctatcttgtatttacagggaaaaagga--tgagaaaatatcttgattgtcgatgttgattcaatttt---cctgggtgctgtttcattactg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37997056|gb|CF808645.1|CF808645
EST:     TGCTTCAGAATGCAAATTTTCGCAATGCAATGGCGCATCCAACCAATAAG                         GAACTGGCACACAGACAACAATTCTACTTCTGGAAGAACTATAGGAACAAT
genomic: TGCTTCAGAATGCAAATTTTCGCAATGCAATGGCGCATCCAACCAATAAGgtaaattgca ... tgtatattagGAACTGGCACACAGACAACAATTCTACTTCTGGAAGAACTATAGGAACAAT
EST: gi|23734705|gb|BU765591.1|BU765591
EST:     AAATTTTCGCAATGCAATGGCGCATCCAACCAATAAG                         GAACTGGCACACAGACAACAATTCTACTTCTGGAAGAACTATAGGAACAAT
genomic: AAATTTTCGCAATGCAATGGCGCATCCAACCAATAAGgtaaattgca ... tgtatattagGAACTGGCACACAGACAACAATTCTACTTCTGGAAGAACTATAGGAACAAT
EST: gi|31475667|gb|CD417695.1|CD417695
EST:     TGCTTCAGAATGCAAATTTTCGCAATGCAATGGCGCATCCAACCTATAAG                         GAACTGGCACACAGACAACAATTCTACTTCTGGAAGAACTTATAGGAACAA
genomic: TGCTTCAGAATGCAAATTTTCGCAATGCAATGGCGCATCCAACCAATAAGgtaaattgca ... tgtatattagGAACTGGCACACAGACAACAATTCTACTTCTGGAAGAACT-ATAGGAACAA
EST: gi|192330115|gb|FK019770.1|FK019770
EST:     TGCTTCAGAATGCAAATTTTCGCAATGCAATGGCGCATCCAACCAATAAG                         GAACTGGCACACAGACAACAATTCTACTTCTGGAAGAACTATAGGAACAAT
genomic: TGCTTCAGAATGCAAATTTTCGCAATGCAATGGCGCATCCAACCAATAAGgtaaattgca ... tgtatattagGAACTGGCACACAGACAACAATTCTACTTCTGGAAGAACTATAGGAACAAT