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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACAGCAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtcttggcttctactctgcagtggtgtcatttacaaattatctggtggaatagttaattaagagtattttttttttccttacaccatagtgaaacatt...

Basic information

species Glycine max
transcript GLYMA10G37750.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37750.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g39670.1 (Oryza sativa), 5'ss of exon 4
TTACAGCAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgt-cttggcttctactctgca--gtggtgtcatttacaaat------tatctggtggaatagttaattaagagtattttttttttccttacaccatagtgaaacatt
 |||| |  |    | ||||||||||||||||||||||| |||||||| ||||| ||||||||| | ||  |  | ||||||  | | |||  |    |  |   ||  | || ||| | ||      | | ||||| ||   |  |||  ||||  |||   ||    ||     || |        
GTACAACTCCATTGGAGCATATGGGCAGTCAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGgtgcgcattgctcttctcttagatcatgtcgccagttatagatatattttttttggtgcaacgctgtatttggagttatttcaattgagatatgtt-tatt--------

upper sequence: GLYMA10G37750.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G009940_T02 (Zea mays), 5'ss of exon 5
TTACAGCAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtcttggcttctactctgcagtggtgtcatttacaaattatctggtggaatagttaattaagagtattttttttttccttacaccatagtgaaacatt---
 || || | |    ||||||||||||| ||||||||||| ||||| || ||||| ||||||||| | || ||  |  |||| | |     || |     ||   |  |  |||    |   | ||||| | |   || |||  | |   ||| | | | || || | |  |    |      
GTATAGTAGCATTGGTGCATATGGGCAATCAAAGCTTGCAAACATATTGCATGCTAATGAACTTGCCAGGCGATTTGAGgtatgtct-tgtccatctaacacatgcatgttttcttgaccttatggtgca-tgtatagttacaa-tgcatttgtatgcattgcaactttttttctcgagcgc