1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGCCTACATGTTTGTCCACGATGGATTAGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTGCTGCTCACCAAgtaattataaacttcacatttatttagtaaaacaaattagaaaaggaacgtgttttgggtgtttgtttctgtttcttgtggaataggatctgaattatgatcttatgaccttgaatttttgttgtctgtattcag
species | Glycine max |
transcript | GLYMA10G37560.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTGCTGCTCACCAA CTCCACCATTCGGATAAATTCAACGGGGCGCCATATGGCCTCTTTTTGGGAEST: gi|58015652|gb|CX702394.1|CX702394
genomic: GTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTGCTGCTCACCAAgtaattataa ... ctgtattcagCTCCACCATTCGGATAAATTCAACGGGGCGCCATATGGCCTCTTTTTGGGA
EST: GTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTGCTGCTCACCAA CTCCACCATTCGGATAAATTCAACGGGGCGCCATATGGCCTCTTTTTGGGAEST: gi|192307276|gb|FK002368.1|FK002368
genomic: GTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTGCTGCTCACCAAgtaattataa ... ctgtattcagCTCCACCATTCGGATAAATTCAACGGGGCGCCATATGGCCTCTTTTTGGGA
EST: GTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTGCTGCTCGCCAA CTCCACCATTCGGATAAATTCAACGGGGCGCCATATGGCCTCTTTTTGGGA
genomic: GTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTGCTGCTCACCAAgtaattataa ... ctgtattcagCTCCACCATTCGGATAAATTCAACGGGGCGCCATATGGCCTCTTTTTGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCTACATGTTTGTCCACGATGGATTAGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTGCTGCTCACCAAgtaattataaacttcacatttatttagtaaaacaaattagaaaaggaacgtgttttgggtgtttgtttctgtttcttgtggaataggatctgaattatgatcttatgaccttgaatttttgttgtctgtattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT