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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGATCATCAAAATCTTTATTTTTACAACTACTAAACTCCCTATTTCGTGCACCTATGTCATTTTATGACTCCACTCCTTTGGGAAGGATACTTAGTAGGgtaagcatatcaaatagtttagtttctttttcctttgcagtgaaatgcaatgaaaaatttaatattttgaattttatctcgttgttcag

Basic information

species Glycine max
transcript GLYMA10G37150.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37150.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g06440.1 (Oryza sativa), 5'ss of exon 4
TCGATCATCAAAATCTTTATTTTTACAACTACTAAACTCCCTATTTCGTGCACCTATGTCATTTTATGACTCCACTCCTTTGGGAAGGATACTTAGTAGGgtaagcatatcaaa---tagtttagtttctttttcctttgcagtgaaatgcaatgaaaaatttaata-ttttgaattttatctcgttgttcag
 |   | |||| ||| |||||||  || ||||| ||||| || || ||||||||||||||||||| ||| || |||||| | |||||| || | ||  ||||||| |   | ||   ||  | |   |      |   |  | |  | | | ||  | | || || | ||| || |  |   |  |  |  ||
GCAGACTTCAAGATCCTTATTTTCCCAGCTACTTAACTCACTGTTCCGTGCACCTATGTCATTTTTTGATTCTACTCCTCTAGGAAGGGTATTGAGCCGGgtaagaactcctaaacatatgtgaaagtggaaagctgatatattacagttccatttacatttgaacaatttcgattggtgctttctcatgtag

upper sequence: GLYMA10G37150.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G59140.1 (Arabidopsis thaliana), 5'ss of exon 4
TCGATCATCAAAATCTTTATTTTTACAACTACTAAACTCCCTATTTCGTGCACCTATGTCATTTTATGACTCCACTCCTTTGGGAAGGATACTTAGTAGGgtaagcatatcaaatagtttagtttctttttcctttgcagtgaaatgcaatgaaaaatttaatattttgaattttatctcgttgttcag
    ||||||   || || ||||  || || || ||||| || ||| | |||||||||||||||||||||||||| ||| | ||| |||| ||||| |||||||  ||   ||  |  ||  |   | |||   ||    |  | |    |    || ||  |    || | ||  | | | | | |||
GAAGTCATCAGCTTCATTGTTTTCTCAGCTTCTTAACTCTCTTTTTAGAGCACCTATGTCATTTTATGACTCCACACCTCTTGGACGGATTCTTAGCAGGgtaa--atgctaatgaacttgatgaatatttatgtt----tacattctggtattcaacttctttaactgtaattactttggatttgcag