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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttttactcgtgctcaaatatggcaagagattgactagttgttccaattagaagtttagaacagtgatgggaaacacgaatatgatccttctctggatatatttctgtag

Basic information

species Glycine max
transcript GLYMA10G35960.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35960.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G165176_T01 (Zea mays), 5'ss of exon 6
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttttactcgtgctcaaatatggcaagagattgactagttgttccaattagaagtttagaacagtgatgggaaacacgaatatgatccttctctggatatatttctgtag
| || || ||||| || ||||| || |||||||| |||||| | |||||||| || ||||||||||||||||| ||           ||| ||  |           || | |     || | |||     |  ||  | || ||     ||   |||||| |   |  ||  ||| |         
GCACGTTTACTCTCTCGAATCTTGGTATGTTTGGAGTTGATAGGTTTGATGCAATACTGCCACCTGGAACTgtaag----------atgcacagttt--------attttattctccatttctatttttcatgcagtgctgt-ataccttactgaaatatg-tgggttactaaatacag--------

upper sequence: GLYMA10G35960.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G036534_T02 (Zea mays), 5'ss of exon 5
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgag-tgttttactcgtgctcaaatatggcaagagattgactagttgttccaattagaagtttagaacagtgatgggaaacacgaatatgatccttctctggatatatttctgtag
| || || ||||| || ||||| || |||||||| |||||| | || ||||| || ||||||||||||||||| || ||    | |  |  |    |        |  || |   |   |||    ||      |  || |     |||  ||  ||| |                            
GCACCTTTACTCTTTCGAATCTTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatggacaatttattttattctccatttctattttaat--gcaattctgcataccctactgaaatatc--cgggttac-tgaaaacag-------------------------

upper sequence: GLYMA10G35960.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G34430.1 (Arabidopsis thaliana), 5'ss of exon 4
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtg-ttttactcgtgctcaaatatggcaagagattgactagttgttccaattagaagtttagaacagtgatgggaaacacgaat-atgatccttctctggatatatttctgtag
|||| |||||||| || || || ||||||||||| |||||||| |||||||||||||| || |||||||| || |||| ||||||   |   |   |||   |     |    | ||| |  |  ||||    | | ||   || |  | |  ||   | ||     ||||     |  ||   || ||
GTACCTTCACTCTCTCTAACCTAGGAATGTTTGGCGTTGATCGGTTTGATGCTATTCTACCCCCTGGAACAgttagtgcttttacctttatgcgtgtattttagtttgtatcttggttatgtcttttagc--ctaataattatgctaaggataacagctcattggttttcttgtctttgatcaatgaag

upper sequence: GLYMA10G35960.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgtttta-ctc-gtgctcaaatatggcaa------gagattgactagttgttccaattagaagtttag--------aacagtgatgggaaacacgaatatgatccttctctggatatattt-ctgtag
||||||||||||| || || || |||||||||||||| ||||| ||||| || |||||||||||||||||||| ||| ||| | ||| |   |  ||  |  | |       | ||| |    |||   ||  ||     | ||        ||  ||    ||| | ||  | || ||  |  | || || | ||| ||| ||
GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacata-attatgttgatttgcatgttttttctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193397613|gb|FK365075.1|FK365075
EST:     GCCACCTGGAACT                         GGTAGCAATAATGGCTGTTGGAGCATCGGAGCCCACTGTTGTGGCTACAAA
genomic: GCCACCTGGAACTgtgagtgttt ... atttctgtagGG-AGCAATAATGGCTGTTGGAGCATCGGAGCCCACTGTTGTGGCTACAAA
EST: gi|13790727|gb|BG653318.1|BG653318
EST:     TGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCGGAGCCCACTGTT
genomic: TGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttctgtagGGAGCAATAATGGCTGTTGGAGCATCGGAGCCCACTGTT
EST: gi|193417002|gb|FK382036.1|FK382036
EST:     TGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCGGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttctgtagGGAGCAATAATGGCTGTTGGAGCATCGGAGCCCACTGTTGTGGCTACAAAG
EST: gi|193609247|gb|FK561159.1|FK561159
EST:     AATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCGGAGCCCACTGTTGTGGCTACAAAG
genomic: AATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttctgtagGGAGCAATAATGGCTGTTGGAGCATCGGAGCCCACTGTTGTGGCTACAAAG