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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTAACCTGGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGATAAGGAAGgtttggaaaattattttttaaactgccaacattgatttctgtcataaacttattacacttaaaatgatttacactgcgtactatttcttaacttatctgcatccttattcaatatgtgtaatgctcttgtagtgtagactaatgtagatttttgttaattgttgaattgcatatgcatggaaaatgtcatgcag

Basic information

species Glycine max
transcript GLYMA10G35630.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208149596|gb|GD948188.1|GD948188
EST:     GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGATAAGGAAG                         ATTATAGGAGA-TGGTTCACAAACAGTTATTTTTC
genomic: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGATAAGGAAGgtttggaaaa ... tgtcatgcagATTATAGGAGAATGGTTCACAAACAGT-ATTTTTC
EST: gi|22523699|gb|BU082510.1|BU082510
EST:     GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGATAAGGAAG                         ATTATAGGAGAATGGTTCACAAACAGTATTTTTCTGGAGAGGCTCTTGAAA
genomic: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGATAAGGAAGgtttggaaaa ... tgtcatgcagATTATAGGAGAATGGTTCACAAACAGTATTTTTCTGGAGAGGCTCTTGAAA
EST: gi|20498328|gb|BQ273258.1|BQ273258
EST:     GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGATAAGGAAG                         ATTATAGGAGAATGGTTCACAAACAGTATTTTTCTGGAGAGGCTCTTGAAA
genomic: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGATAAGGAAGgtttggaaaa ... tgtcatgcagATTATAGGAGAATGGTTCACAAACAGTATTTTTCTGGAGAGGCTCTTGAAA
EST: gi|193611998|gb|FK563597.1|FK563597
EST:     GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAACGATAAGGAAG                         ATTATAGGAGAATGGTTCACAAACAGTATTTTTCTGGAGAGGCTCTTGAAA
genomic: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGATAAGGAAGgtttggaaaa ... tgtcatgcagATTATAGGAGAATGGTTCACAAACAGTATTTTTCTGGAGAGGCTCTTGAAA
EST: gi|254331851|gb|GR846161.1|GR846161
EST:     GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGATAAGGAAG                         ATTATAGGAGAATGGTTCACAAACAGTATTTTTCTGGAGAGGCTCTTGAAA
genomic: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGATAAGGAAGgtttggaaaa ... tgtcatgcagATTATAGGAGAATGGTTCACAAACAGTATTTTTCTGGAGAGGCTCTTGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCTAACCTGGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGATAAGGAAGgtttggaaaattattttttaaactgccaacattgatttctgtcataaacttattacacttaaaatgatttacactgcgtactatttcttaacttatctgcatccttattcaatatgtgtaatgctcttgtagtgtagactaatgtagatttttgttaattgttgaattgcatatgcatggaaaatgtcatgcag

- - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA