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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGACTTCCTTTTTGAGTCTCCGGATGGCAGAAGATACCTCAATTTTACTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAAgtgggtttgttattattaactgaaaattgtgcatcaactgcttctgtatgcaatagtggaggtttaatttacccttcttgttgaaccattaaatttcag

Basic information

species Glycine max
transcript GLYMA10G35450.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35450.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0019g04410.t01 (Vitis vinifera), 5'ss of exon 5
GCAAGACTTCCTTTTTGAGTCTCCGGATGGCAGAAGATACCTCAATTTTACTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAAgtgggtttgttattattaactgaaaattgtgcatcaactgcttctgtatgcaatagtggaggtttaatttacccttcttgttgaaccattaaatttcag
| |||||||||||||||||||  | || |||||  | |||||||| |||||||||||||| || ||||| ||||| || |||||||||||||  || ||||| ||| |   | |||||  |   | |  |     || |  ||   |   |  || |     |||  || |    |||  |  ||  |||   | ||||
GGAAGACTTCCTTTTTGAGTCATCTGACGGCAGGCGCTACCTCAACTTTACTTTTGGTTGTCCACTTGTGGAGACCGTAGTTGACAAGTTGACAGTCAAAgtaggtctagcactatta-ttctgattcatatggtaattatttgatttctccttact----ttttgcttcagtgatctcatctaag-attttgtctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340868|gb|GR854596.1|GR854596
EST:     CTTTTGGTTGCCCTC-TGTCGAGACAGTGGTTGACAAGTTGATTGTAAAA                         GTTGTGCTGCCAGAGGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGAA
genomic: CTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAAgtgggtttgt ... taaatttcagGTTGTGCTGCCAGAGGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGAA
EST: gi|254340867|gb|GR854595.1|GR854595
EST:     CTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAA                         GTTGTGCTGCCAGAGGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGAA
genomic: CTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAAgtgggtttgt ... taaatttcagGTTGTGCTGCCAGAGGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGAA
EST: gi|6725446|gb|AW309845.1|AW309845
EST:     TTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAA                         GTTGTGCTG-CAGAGGGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGA
genomic: TTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAAgtgggtttgt ... taaatttcagGTTGTGCTGCCAGA-GGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGA
EST: gi|58016041|gb|CX702783.1|CX702783
EST:     CTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAA                         GTTGTGCTGCCAGAGGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGAA
genomic: CTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAAgtgggtttgt ... taaatttcagGTTGTGCTGCCAGAGGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGAA
EST: gi|9259137|gb|BE347284.1|BE347284
EST:     CTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAA                         GTTGTGCTGCCAGAGGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGAA
genomic: CTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAAgtgggtttgt ... taaatttcagGTTGTGCTGCCAGAGGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGAA
EST: gi|58023148|gb|CX709889.1|CX709889
EST:     CTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAA                         GTTGTGCTGCCAGAGGGATCCAAAGATCCCCCAGTTGAGATTCCTTTTGAA
genomic: CTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAAgtgggtttgt ... taaatttcagGTTGTGCTGCCAGAGGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGAA
EST: gi|38193187|gb|CF922393.1|CF922393
EST:     CTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAA                         GTTGTGCTGCCAGAGGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGAA
genomic: CTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAAgtgggtttgt ... taaatttcagGTTGTGCTGCCAGAGGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGAA