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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAACTGAATTCACGTACTTTGTTTGCTGTGATTACTACCTTGGCTGTTCTTCCTACTGTTTGGCTCCGTGACCTAAGCATTCTCAGTTACATATCCGgtaagagcttatttttggtgcaggtagtgatcagttatccattaaagcttggtcccatttgcctttggccttaaggtcatattgctgaaataaggtttta...

Basic information

species Glycine max
transcript GLYMA10G35280.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35280.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0019g04660.t01 (Vitis vinifera), 5'ss of exon 7
ATTGAACTGAATTCACGTACTTTGTTTGCTGTGATTACTACCTTGGCTGTTCTTCCTACTGTTTGGCTCCGTGACCTAAGCATTCTCAGTTACATATCCGgtaagagcttatttttg-----gtgcaggtagtgatcagttatccatt---aaagcttggtcccatttgcctttggccttaag--gtcatattgc---tgaaataaggtttta---------------------------------------------------------------------------------------
 || |  |   |||||    | | || ||  |||| ||  || ||||||||||||||||||| |||||||| || || ||  |||| |||||||| || ||||||   |   |  ||     ||  | ||||  ||   ||||  |||   ||   ||  |   ||    ||| |    ||    |||| |||     | || |     | ||                                                                                       
TTTCACTTAGGTTCACACCATCTATTCGCATTGATGACCGCCCTGGCTGTTCTTCCTACTGTCTGGCTCCGAGATCTCAGTGTTCTTAGTTACATCTCTGgtaagtattggatcgtgtagatgtagacgtagctatgtcttatggattttgaatatttttttttatgaagcttggtatatacatagtcacattatacgtaaattgcaagtgtatatggactgaattatcatatccgaggcttgatttctttggtaattcttagtttgggcttctttctttttttctttttcttttttcag