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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTGGTAAAGTTGTTCCCGGGGTAATGGATTCTGCTACTGCAAAGCACTTGTCTCAGGCATATGGAACATTGGCTGAGCGTGTGGCTACCATTGCTCAGgtttgcttgttatatttcttattgttagttttgttgagcaagaaacatatacaaatgcattttactgtaaaatagaatgtgtgattagtaacatctgtga...

Basic information

species Glycine max
transcript GLYMA10G35170.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35170.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0019g04730.t01 (Vitis vinifera), 5'ss of exon 5
TAGTGGTAAAGTTGTTCCCGGGGTAATGGATTCTGCTACTGCAAAGCACTTGTCTCAGGCATATGGAACATTGGCTGAGCGTGTGGCTACCATTGCTCAGgtttgcttgttatatttcttattgttagttttgttgagcaagaaacatatacaaatgcattttactgtaaaatagaatgtgtgattagtaacatctgtga--
 |||||||||||||| || || ||||||||  ||||| | |||||||| |||||||| |||||||| ||  ||||||| || |||||| | || |||||||| ||    | | |    |  ||| |  | | |||| |  |  ||||        | ||||||  || ||  | |  | | |  ||  |   |  ||     
CAGTGGTAAAGTTGTCCCAGGAGTAATGGACACTGCTGCAGCAAAGCATTTGTCTCATGCATATGGTACTATGGCTGATCGAGTGGCTGCTATAGCTCAGgtctgtacat-acaccg-tgcttgattatgtagttgtggcaataacaagatttctttcatttttttgaaacctcgtttctttatttctttcaaaatgaagtt