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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGTATGTACACAGATACTGTTCAGAAACTGCCTACTAATTCAGAATCTAATATTCTGAGGTGTTCTACAGTTCCCCGATTTAAATACCTCCCCATCAGgtttgtctgatcttgtattttatttgttttatctgtcatttcataatgcatggttctgccaattctgtgctggttttattcaatgactatttttatgagtaattttgctaggaaaccttctaatgcacattctgaagctactgattaatattctaaatgtcatatcttatttgcaaactctcttggtgaatccag

Basic information

species Glycine max
transcript GLYMA10G34570.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34570.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0340g00080.t01 (Vitis vinifera), 5'ss of exon 4
ACCGTATGTACACAGATACTGTTCAGAAACTGCCTACTAATTCAGAATCTAATATTCTGAGGTGTTCTACAGTTCCCCGATTTAAATACCTCCCCATCAGgtttgtctgatcttgtattttatttgttttatctgtcatttcataatgcatggttctgccaattctgtgctggttttattcaatgactatttttatgagtaattttgctaggaaaccttctaatgcacattctgaagctactgattaatattctaaatgtcatatcttatttgcaaactctcttggtgaatccag
| || ||||| || |||||||| |||||| ||||||||||||||||||| |||||  |||| || || |||||||| || || ||||| || |||||||||| ||  |    ||| ||||      ||       ||| ||             | || ||| |   |||| |  | | |         || || ||  |  | |  | ||  |                                                                                 
ATCGGATGTATACCGATACTGTGCAGAAAGTGCCTACTAATTCAGAATCAAATATAATGAGATGCTCCACAGTTCCTCGCTTCAAATATCTTCCCATCAGgtatgatta---ttgcatttagaagtttggggaattcaattagaggcaagacactttggcaaat---tgcttgcctcact---------ttgttgtggattgtgtgacaagagag--------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337377|gb|BI498033.1|BI498033
EST:     AATATTCTGAGGTGTTCTACAGTTCCCCGATTTAAATACCTCCCCATCAG                         TGCTCCAGCATTGTCCTCTAGAGGGACAAAGAAGGCATTTACTCCATCATC
genomic: AATATTCTGAGGTGTTCTACAGTTCCCCGATTTAAATACCTCCCCATCAGgtttgtctga ... gtgaatccagTGCTCCAGCATTGTCCTCTAGAGGGACAAAGAAGGCATTTACTCCATCATC
EST: gi|20498322|gb|BQ273252.1|BQ273252
EST:     AATATTCTGAGGTGTTCTACAGTTCCCCGATTTAAATACCTCCCCATCAG                         TGCTCCAGCATTGTCCTCTAGAGGGACAAAGAAGGCATTTACTCCATCATC
genomic: AATATTCTGAGGTGTTCTACAGTTCCCCGATTTAAATACCTCCCCATCAGgtttgtctga ... gtgaatccagTGCTCCAGCATTGTCCTCTAGAGGGACAAAGAAGGCATTTACTCCATCATC