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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCTGTATATTGTTGATGCACGGCCTAGGAAAAATGCATTGGCTAATGGTGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCTGAGgtctgtaataaacttgaagtggtccagttgtgatttttgttttccagttataattataaatttgactttattttctaagtatctaaattcttattttatattatcag

Basic information

species Glycine max
transcript GLYMA10G34510.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34510.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 11
AAAGCTGTATATTGTTGATGCACGGCCTAGGAAAAATGCATTGGCTAATGGTGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCTGAGgtctgt-aataaacttgaagtggtccagttgt--gatttttgttttccagttataattataaatttgactttattttctaagtatctaaattcttattttatattatcag
 ||||| ||||||| ||||||| | ||||||||||||||||| || ||||| || ||||||||||| ||||||||||| || || |||||||||||||| ||  || |||   ||||  |||||    || |   | | ||| | | |   |  ||||  |    ||| |||| |  ||| || |||   |||                 
GAAGCTTTATATTGCTGATGCAAGACCTAGGAAAAATGCATTAGCCAATGGAGCAATGGGAGGTGGCTCAGAATCATCTTCCAATTATTTTCAATCTGAAgttagtgaatggtcttg--gtggtttgattattaaagtcttgatcttc---tggaattcca----tgattttagtgactatgtttctttcttcag---------------

upper sequence: GLYMA10G34510.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G04540.1 (Arabidopsis thaliana), 5'ss of exon 11
AAAGCTGTATATTGTTGATGCACGGCCTAGGAAAAATGCATTGGCTAATGGTGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCTGAGgtctgtaataaacttgaagtggtcc--agttgtgatttttgttttccagttataattataa-atttgactttattttctaagtatctaaattcttattttatattatcag
 ||||| ||||| || |||||| | ||||||||||||||||| || ||||| || | |||||| || ||||||||||| ||||| ||||| |||||||| |||||||     | | |||||||    || |     |||||| |||  |   |  || |      ||||  | |||| |    |                          
GAAGCTTTATATCGTAGATGCAAGACCTAGGAAAAATGCATTAGCAAATGGAGCAAAGGGAGGAGGCTCAGAATCATCTTCAAATTATTTGCAATCTGAAgtctgtacatggcctaaagtggtttggagctcaatattttgtcttctggaactgcttgttttgactgacaatgttttttcttcag-------------------------